Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48670 319 / 1e-100 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 281 / 4e-86 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G13790 204 / 7e-57 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT5G59390 197 / 1e-55 XH/XS domain-containing protein (.1) AT4G01180 190 / 4e-53 XH/XS domain-containing protein (.1) AT4G00380 188 / 9e-52 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G15910 184 / 3e-50 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT1G80790 177 / 6e-48 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01780 108 / 5e-25 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002703 [exp] 1067 / 0 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000950 [exp] 640 / 0 AT3G12550 159 / 3e-42 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 449 / 1e-150 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 445 / 3e-149 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 216 / 1e-61 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10032933 [exp] 202 / 3e-58 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10009217 [exp] 201 / 2e-56 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 187 / 2e-51 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037987 [exp] 123 / 3e-29 AT5G54570 662 / 0.0 beta glucosidase 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 466 / 4e-156 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 261 / 3e-78 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 194 / 2e-55 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 191 / 9e-53 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.010G087400 [exp] 45 / 9e-05 AT3G22430 418 / 3e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10000949 pacid=23168447 polypeptide=Lus10000949 locus=Lus10000949.g ID=Lus10000949.BGIv1.0 annot-version=v1.0 ATGGAGGATGATTCTCAGATCAGCACAGATATAAGCGAGTCAGAAAGGGATGAATATGAAGATCAATGTTATGAAGAATTGAAGAGTGGGAAATACAGTG TACGAAATCCTGATGGCACCTTTGCCTGTCCATATTGTCCCAAGGACAGAAAGCAAGACTATCCTTACCTTGCGATTTTTGAACATGCTTATGGGGTTGG CAATAGTAAGTCAGCCAAAAGGACATGCCGGGAGAAAGCAAATCACGGGGCATTGGCTAGGTACTTGGAGGCAACTGTTGGTGCTCCACCATGCAAGCCA AATCTTCAAAAACAACCTCTAAAGAAGCCATCGGATCAAAGGAGTAAGAAAGCAACGGATCCAAGTAGTCGCTTGTTTGCTTGCCCGATTTGTCCCAATA GGAAGAAAGATTACCTTTACCATGAGATCCTCCAACATGCTCTCGGTGTCGGATACAGTGCTTCTGCTAAAAGGACAAGCGATGAGAAACAAATGCACAT GTCTTTGGCAAGATATTTGGAAAGGATTGCATCAGGACCATCATCGAAACTGAAAGTTAAAAATGATGCTTCAGAGAAAACGGATGTGCAAAATAATTCT CTATGTTCTTTTGCTTGCCCACATTGTTCCAAGAAAAGAAAGCAAGATGACCTTTACAATGTAATCCTTCAGCATACCTGTGGAATGGGCAAGAGTAATT TGGCCAAAAGAACTTGCAAGGAAAATCCTAATCACTTGGATTCTGATAAGGACTTGGGAAAGAATATAGCAGGTCCATCAGGAAGGCTAAAAGAACAAGA AGATATTGTAAGTGGTTCCATGAAGGAAGAGGTATTTGTCTGGCCTTGGACAGGAGTCGTGGTTAATATTCCCAAAGCTGAGGCAGCAGGTGGGCAGTTC TTGGGAGAAAATGGATCCAAGTTCAAGGATGAACTTGTGAGTAGGGGCTTCAATCCGCTTGGAGTTCAGCCACTGCAAGATTATCAAGGCCATTCAGGAA CTGTGATTGTAGAATTTGATGGAGATTGGCATGGTTTATACAATGCTCTTTCATTTGAAAAAGCTTATGAGGCTGAAAACCGGGGGAAGAATGAATGGCT TGAAAATAGTGAGAACGCAGCAGGCATTTATTGTTGGTTTGCTCGTCCTGCTGACTACAATGCTACCAACATCATCGGAGAACATCTGAGAAGAACGACA GATCTTAAAACGATTTCTGAGGTCATGGAAGTTGAGAACAAGGCGAGTAACGAATTTGTCTCTTGTCTTTCGAACTCTCTTAAACTGAAAAAACAGCAGG TGGAGGAGATGGATCAGAGATGCAAGGAAACCTCAACCTTTCTCAAGAACTTGATGGAAGAGAAAGAAACCCATCTTCAGGCTTATAAGGAAGAGCTACG AAAAATCCAAGCAAGTGCCAACGATCACTTCCAGAGAATATTTAATGATCATGAAAAGCTTAAGTCACAGGTGGATGCTCAGAAAAAGGAGCTTGAGACG CGCAGGGTACAATTGGAAAATAGAGAAACCAAAATTGAAGCAGACAGAAGAATGCTCTTGCAAGATATTGAAAAGGTGTGTCTGGCAATGCCCTACTTGC TTGTCCACTCAGCTGCCTTAGGGGAGCAGAGAACAAATGAGGACCTACTGAAATTAGCTGAGGATCTTAAGAGGGAGAAAGACAAACTTGACAGTCGAAT CATTCAATTGGAAAAGCAAGTAGATGCAAAGCCAAATCTGGAGTCAGAAGTAGAGCAACTCAGAGGTGAATTGGATGTGATGAAATGCAAGGCAGGCAGT GGTGACTCTGAAGTTTTGGGATGA
AA sequence Show only first row Show all	>Lus10000949 pacid=23168447 polypeptide=Lus10000949 locus=Lus10000949.g ID=Lus10000949.BGIv1.0 annot-version=v1.0 MEDDSQISTDISESERDEYEDQCYEELKSGKYSVRNPDGTFACPYCPKDRKQDYPYLAIFEHAYGVGNSKSAKRTCREKANHGALARYLEATVGAPPCKP NLQKQPLKKPSDQRSKKATDPSSRLFACPICPNRKKDYLYHEILQHALGVGYSASAKRTSDEKQMHMSLARYLERIASGPSSKLKVKNDASEKTDVQNNS LCSFACPHCSKKRKQDDLYNVILQHTCGMGKSNLAKRTCKENPNHLDSDKDLGKNIAGPSGRLKEQEDIVSGSMKEEVFVWPWTGVVVNIPKAEAAGGQF LGENGSKFKDELVSRGFNPLGVQPLQDYQGHSGTVIVEFDGDWHGLYNALSFEKAYEAENRGKNEWLENSENAAGIYCWFARPADYNATNIIGEHLRRTT DLKTISEVMEVENKASNEFVSCLSNSLKLKKQQVEEMDQRCKETSTFLKNLMEEKETHLQAYKEELRKIQASANDHFQRIFNDHEKLKSQVDAQKKELET RRVQLENRETKIEADRRMLLQDIEKVCLAMPYLLVHSAALGEQRTNEDLLKLAEDLKREKDKLDSRIIQLEKQVDAKPNLESEVEQLRGELDVMKCKAGS GDSEVLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	0	1
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	4.7	0.8540
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	5.7	0.8580
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	6.7	0.8451
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10015796 [exp]	7.3	0.8158
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	10.2	0.8250
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	10.4	0.8134
AT5G50840			unknown protein		Lus10040383 [exp]	14.1	0.8355
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	15.5	0.8344
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	15.8	0.8349
AT5G01010			unknown protein		Lus10029706 [exp]	18.5	0.8140

Compare expression of checked genes

Lus10000949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.