Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12550 159 / 3e-42 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT3G48670 145 / 3e-37 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT1G13790 140 / 1e-35 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT4G01780 137 / 2e-35 XH/XS domain-containing protein (.1) AT4G00380 133 / 3e-33 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G15910 133 / 3e-33 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT3G29375 116 / 1e-28 XH domain-containing protein (.1.2) AT5G59390 111 / 5e-26 XH/XS domain-containing protein (.1) AT1G80790 110 / 1e-25 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01180 92 / 8e-20 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002703 [exp] 651 / 0 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000949 [exp] 637 / 0 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 311 / 5e-99 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 309 / 4e-98 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000948 [exp] 191 / 3e-58 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 157 / 2e-41 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 152 / 6e-40 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10040287 [exp] 140 / 6e-37 AT1G15910 164 / 4e-45 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 132 / 5e-33 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 189 / 1e-52 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 150 / 4e-39 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 139 / 3e-35 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 76 / 1e-14 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain PF03469 [flax] [poplar] XH XH domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10000950 pacid=23168456 polypeptide=Lus10000950 locus=Lus10000950.g ID=Lus10000950.BGIv1.0 annot-version=v1.0 ATGGAGGATGATTCTCAGATCAGCACAGATATAAGCGAGTCAGAAAGGGATGAATATGAAGATCAATGTTATGAAGAATTGAAGAGTGGGAAATACAGTG TACGAAATCCTGATGGCACCTTTGCCTGTCCATATTGTCCCAAGGACAGAAAGCAAGACTATCCTTACCTTGCGATTTTTGAACATGCTTATGGGGTTGG CAATAGTAAGTCAGCCAAAAGGACATGCCGGGAGAAAGCAAATCACGGGGCATTGGCTAGGTACTTGGAGGCAACTGTTGGTGCTCCACCATGCAAGCCA AATCTTCAAAAACAACCTCTAAAGAAGCCATCGGATCAAAGGAGTAAGAAAGCAACGGATCCAAGTAGTCGCTTGTTTGCTTGCCCGATTTGTCCCAATA GGAAGAAAGATTACCTTTACCATGAGATCCTCCAACATGCTCTCGGTGTCGGATACAGTGCTTCTGCTAAAAGGACAAGCGATGAGAAACAAATGCACAT GTCTTTGGCAAGATATTTGGAAAGGATTGCATCAGGACCATCGTTGAAACCGAAAGTTAAAAATGATGCTTCGGAGAAAACGGATGTGCAAAATAGTTCT CTATGTTCTTTTGCTTGCCCACATTGTTCCAAGAAAAGAAAGCAAGATGACCTTTACAATGTAATCCTTCAGCATACCTGTGGAATGGGCAAGAGTAATT TGGCCAAAAGAACTTGCAAGGAAAATCCTAATCACTTGGATTCTGATAAGGACTTGGGAAAGAATATAGCAGGTCCATCAGGAAGGCTAAAAGAACAAGA AGATACTGTAAGTGGTTCGATCAATGAAGAGGTATTTGTCTGGCCTTGGACCGGAGTCGTGGTTAATATTCCCAACACTGAGACAGCAGATGGATCCAAG TTCGAGGATGAACTTGTGAGTAGGGGCTTCAATCCCCTTGGAGTTCAACCACTGCGAGATTATGAAGGCCATTCAGGAACTGCGATTGTAGAATTTGATG GAGATTGGCCTGATATATCAAGCCATGGTGGTCATATACGTGTTAAGCGAATGGGTGAACTGGACGGTGAGCCATTCCTTAAAGCGATGAGCAAGATTTA TTCAGAGGAAGAAGCGGAAGATAAGGCGTCGGAACTATGTTCACTGTGGGTAGAGTATCTCAAAGACCCAGATTGGCATCCTTTCAAAGTTGTTGAGGTG GAAGGTGGGAAGCATCAGTATGTACTTAACGAGGAAGATGAAAGATTGAATGGTCTGAGAAAGGAAGTTGGACAGGAAGCTTATGATGCAGTGAGATCAG CTTGGATGGAGATTAACGAATACAACCCGAGCGGAAGATATATAATCTCTGAAGTGTGGAACTACAAGGATGGGAGAAAGGCAACGCTTAAGGAAGGAGT GACATTCTTATTGGATGTGTTGGAGCGACGGAAGAAGGTGTTTGGCTTGAATTAA
AA sequence Show only first row Show all	>Lus10000950 pacid=23168456 polypeptide=Lus10000950 locus=Lus10000950.g ID=Lus10000950.BGIv1.0 annot-version=v1.0 MEDDSQISTDISESERDEYEDQCYEELKSGKYSVRNPDGTFACPYCPKDRKQDYPYLAIFEHAYGVGNSKSAKRTCREKANHGALARYLEATVGAPPCKP NLQKQPLKKPSDQRSKKATDPSSRLFACPICPNRKKDYLYHEILQHALGVGYSASAKRTSDEKQMHMSLARYLERIASGPSLKPKVKNDASEKTDVQNSS LCSFACPHCSKKRKQDDLYNVILQHTCGMGKSNLAKRTCKENPNHLDSDKDLGKNIAGPSGRLKEQEDTVSGSINEEVFVWPWTGVVVNIPNTETADGSK FEDELVSRGFNPLGVQPLRDYEGHSGTAIVEFDGDWPDISSHGGHIRVKRMGELDGEPFLKAMSKIYSEEEAEDKASELCSLWVEYLKDPDWHPFKVVEV EGGKHQYVLNEEDERLNGLRKEVGQEAYDAVRSAWMEINEYNPSGRYIISEVWNYKDGRKATLKEGVTFLLDVLERRKKVFGLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	1.7	0.7951
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	4.2	0.7481
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	8.4	0.7501
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	8.5	0.7319
AT3G08610			unknown protein		Lus10009864 [exp]	11.8	0.6377
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	13.8	0.7191
AT5G41620			unknown protein		Lus10003027 [exp]	14.0	0.7129
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	14.9	0.7138
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	16.2	0.7315
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	17.0	0.7168

Compare expression of checked genes

Lus10000950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.