Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21000 335 / 4e-117 PLATZ transcription factor family protein (.1.2) AT1G76590 323 / 1e-112 PLATZ transcription factor family protein (.1) AT1G43000 234 / 7e-78 PLATZ transcription factor family protein (.1) AT4G17900 228 / 5e-75 PLATZ transcription factor family protein (.1.2) AT1G32700 223 / 1e-73 PLATZ transcription factor family protein (.1.2) AT5G46710 181 / 1e-56 PLATZ transcription factor family protein (.1) AT2G27930 155 / 2e-47 PLATZ transcription factor family protein (.1) AT2G12646 130 / 1e-36 PLATZ transcription factor family protein (.1) AT1G31040 119 / 2e-32 PLATZ transcription factor family protein (.1) AT3G60670 117 / 9e-32 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002700 [exp] 474 / 3e-171 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 351 / 2e-123 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 351 / 1e-121 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 214 / 3e-69 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 213 / 6e-69 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 206 / 7e-67 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 207 / 1e-66 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 207 / 1e-66 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 206 / 1e-65 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259000 [exp] 365 / 3e-129 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 365 / 5e-129 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 220 / 9e-72 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 218 / 3e-71 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 213 / 2e-69 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 209 / 9e-68 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 202 / 2e-65 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 202 / 2e-65 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.001G212400 [exp] 202 / 4e-65 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 200 / 2e-64 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10000952 pacid=23168450 polypeptide=Lus10000952 locus=Lus10000952.g ID=Lus10000952.BGIv1.0 annot-version=v1.0 ATGTCCGTCGATGAGATCGGAGGTAGTAGGGTGAGTCAAATTGATCGAATATCCGGGGGTCACCGGGAGCTAGGTCCGCCGTGGTTGAGGCCTTTGCTGA GAGCCAGCTACTTTGTGCCGTGTCCTTTCCATGGTGATTCCAACAAGAGCGAATGCAATCTATTCTGTTTGGATTGCACTGGGAATGCTTTCTGTTCTTA CTGTTTGATCAATCACCGAGATCACCGCGTTGTTCAGATTCGGCGATCTTCGTATCATAACGTGGTGAGAGTGAATGAAATACAGAAGTATATAGACATA TCTTGCGTCCAGACTTACATTATCAACAGTGCCAAGATAGTGTTTCTGAATGAGAGGCCTCAGCCAAGGCCAGGAAAAGGTGTCACAAATACTTGTGAGA TTTGTTGTAGGAGCCTCCTTGATTCGTTCCGATTCTGTTCTCTTGGCTGCAAGATGGGGGCAATGAAAAGGGGAGACCAGTCCTTATCATTCACACTGAG GGAGAAGCATGGCAGAGATCAGTTCCTGGAGGATGATGGTGGAGTATCTGATTCGGATGAATCTTCGACACCAAAGAAGATTAGGAGGACAAACTTCTTT AACCGTTTGATGGACAGGCTGTCAATCCACTCCCCTGAAGCTCATCGTAATCCCTTCAATGAAGGAAGGGAGAGCTCGGGTGATGATGACAGCATTTCCC CTTCGACTCCTCCACTATTCAATCATCGAAATGCCAGGAGGCGCAAGGGTATACCTCATCGTGCCCCGTTCTGA
AA sequence Show only first row Show all	>Lus10000952 pacid=23168450 polypeptide=Lus10000952 locus=Lus10000952.g ID=Lus10000952.BGIv1.0 annot-version=v1.0 MSVDEIGGSRVSQIDRISGGHRELGPPWLRPLLRASYFVPCPFHGDSNKSECNLFCLDCTGNAFCSYCLINHRDHRVVQIRRSSYHNVVRVNEIQKYIDI SCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKMGAMKRGDQSLSFTLREKHGRDQFLEDDGGVSDSDESSTPKKIRRTNFF NRLMDRLSIHSPEAHRNPFNEGRESSGDDDSISPSTPPLFNHRNARRRKGIPHRAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	0	1
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	1.7	0.9827
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	2.0	0.9804
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	2.6	0.9757
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	2.8	0.9781
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	3.2	0.9764
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10032952 [exp]	4.1	0.9679
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	5.3	0.9701
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	5.7	0.9792
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	5.7	0.9726
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	5.7	0.9753

Compare expression of checked genes

Lus10000952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.