Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39670 586 / 0 Radical SAM superfamily protein (.1.2) AT3G19630 197 / 2e-56 Radical SAM superfamily protein (.1) AT1G60230 178 / 1e-48 Radical SAM superfamily protein (.1) AT3G55460 135 / 1e-35 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT3G13570 114 / 3e-28 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 111 / 1e-27 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT5G18810 108 / 3e-26 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT2G21440 70 / 6e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G50050 65 / 2e-11 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) AT5G64200 64 / 1e-10 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002698 [exp] 822 / 0 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10002699 [exp] 261 / 4e-81 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10020989 [exp] 189 / 2e-53 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10005409 [exp] 187 / 1e-52 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1) Lus10013005 [exp] 155 / 1e-40 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10029159 [exp] 124 / 6e-30 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000081 [exp] 84 / 5e-18 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1) Lus10029328 [exp] 66 / 6e-12 AT1G55310 160 / 2e-49 SC35-like splicing factor 33 (.1.2.3) Lus10012932 [exp] 66 / 8e-12 AT3G13570 174 / 1e-53 SC35-like splicing factor 30A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056500 [exp] 650 / 0 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.010G203300 [exp] 224 / 4e-67 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2) Potri.001G294900 [exp] 192 / 2e-54 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1) Potri.010G203200 [exp] 180 / 3e-51 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.010G040700 [exp] 182 / 3e-50 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.008G056600 [exp] 166 / 5e-46 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1) Potri.003G218600 [exp] 121 / 1e-30 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.001G006400 [exp] 120 / 2e-30 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.016G062500 [exp] 119 / 2e-30 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 112 / 4e-28 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10000953 pacid=23168451 polypeptide=Lus10000953 locus=Lus10000953.g ID=Lus10000953.BGIv1.0 annot-version=v1.0 ATGATTGCTGCTGCTTCCACATCGCTATTCCAGCATGTCTGCTCCGCCTCCGTCGCCACCGTCGTCCGCCCTGGATTCCGTTCCCTCTCCGTCGCTTCTG TTCGTAACCTCTGCACCGCTGCCGCAGCCGCAGCTGTCTCCTCAGCTAAGTTGGTCTCAGTTTCTCAGCTGGATACTCGCGTTCTCCTTGGGTTGTCGGA ACCGGAGCTTCAACAGCTTGCTCTAGACCTCGGCCAGGAGGGCTACAGAGGGAAGCAGCTTCATCACTTAATTTACAAAAGGAAAGTTAAGGAAGTCGAT GATTTTATTCAGTTGCCTCAAGCATTTAGAAGTGTTCTTCAAGAATCCGGGTGGAGAGTTGGCCGGTCTCCAGTCTTTCAAACTATTACAGCTGCTGATG GTACTGTTAAGTTATTGATCAAACTGGAGGACAACAGACTGGTTGAAACTGTGGGCATTCCCGTGACAGATGATAAAGGTTCAATGCGTCTCACTGCATG CGTCTCCTCCCAGGTAGGATGCCCACTGCGTTGCTCATTTTGTGCCACTGGAAAGGGAGGATATTCAAGGAATCTTCAAGCACATGAAATTGTTGAGCAG GTTTTAGCTATTGAAGAGATCTTTAAGCACAGGGTGACAAATGTAGTATTCATGGGTATGGGTGAACCTATGTTGAACTTAAAGGCAGTACTTGGAGCAC ACCGATGCTTAAATAAGGATGTTGAAATTGGGCAGAGAATGATAACCATATCCACAGTTGGGGTTCCTAATACGATCAAGAAATTAGCAACCCATAAGCT TCAATCAACTTTGGCCTTCAGCATACACGCTCCTAATCAGAAACTGAGAGAAACAATAGTGCCAAGTGCGAAATCATATCCTCTGGATGCCATAATGAAA GACTGCAGGGACTATTTTGTTCAAACTAGCAGACGGGTATCCTTTGAGTATGCTCTTTTAGCTGGAGTTAATGATAAGACAGAGCATGCTATCGAACTTG CTGAGCTATTGAATAATTGGGGACGTAACTATCATGTGAACCTTATACCTTTCAATCCGATCGAAGGTTCTGATTATCAACGTCCGACTAAAAGAGGGGT GCAAAATTTTGCTTCCACGCTACAGGCACGTAAAATAACAGTAAGCATTCGTAAGACTAGGGGCATGGATGCCAGTGCAGCTTGTGGTCAACTACGAAAT CAGTTCCAGAAAAGTCCTTTACTTACTGCTGAGCCAGACATCTCTCCACCTGAGGCCGAGCTTGCAGGATCTGATCTGATGAGGAGGTACAGCCCACAGC AATTCAGTCCACCAAGGAGAGGATATGGAGGTCGACCTCCTAGGAGCCCACCCAGGAGTCCACCTAGGAGAGGATATGGTGGAGGTGGCGGTGGCGGTGG CTATGGTCGGCGTAGAGACCAGAATCAAGGCAGCCTGTTGGTTCGCAATATTCCTCTTGATTGCAGGCAAGAAGAGCTCAGGACTCTGTTTCAACGATTT GGAGCCCTAAGAGATGTGTACATGCCAAAGGACTATCACACAGGGGAACCTCGAGGGTTTGCATTTGTACAATTTGTGGAACCATATGACTCCATTGAAG CTCAGCGTCGTGTGAATGGGCAGATATTTGCTGGGAGGGAAATATCTGTAGTGGTAGCAGCAGAGTCAAGGAAAAGACCTGAGGATATGCGCCATAGAAC TCGGTCTAGGGGAGGAGGCCGTGGTGGAGGGTCATCTTATTATGGACACTCTCGTTCCCGTTCGCTATCGCGGTCACGCTCTCCTCGTTATCCCGAGTCC AGATCTAGATGCCGTTCAAGGTCATACTCTCCTGCTCCAAGGCACAGAGATTATTCAGCTTCCCCTGAGAGAAGGCATGCAGACCCTGGCCCCGTAAGGT CTCCTAGAGGTCCTCCTCCACGGCAACAAGATGGCAATCTTGGCAGACGGTCATATTCTCCAAGATCTCCTAGAGGTCCTCCTCCACAGGAACGAGATGG CAATCTCGTCAGACGGTCATATTCTCCAAGATCTACTAGAGGTCCTCCTCCACAGGAACGAGATGGCAATCTCGTCAGACGGTCATATTCTCCAGCAGCT TATCGCAAGCTCGACGAGCTAGAGAAGGGAAATGGCTATAGCAAGAAACATAGTTTGGAGGAAGGAGACTGGAGGAGGCCGTCATCACCTGGAAGGAGAT CGCTTTCCGGGTCTAGATCAAGGTCTCCCGACTTGTCACCCACTGCCGGCCGCCGCAGATGA
AA sequence Show only first row Show all	>Lus10000953 pacid=23168451 polypeptide=Lus10000953 locus=Lus10000953.g ID=Lus10000953.BGIv1.0 annot-version=v1.0 MIAAASTSLFQHVCSASVATVVRPGFRSLSVASVRNLCTAAAAAAVSSAKLVSVSQLDTRVLLGLSEPELQQLALDLGQEGYRGKQLHHLIYKRKVKEVD DFIQLPQAFRSVLQESGWRVGRSPVFQTITAADGTVKLLIKLEDNRLVETVGIPVTDDKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQAHEIVEQ VLAIEEIFKHRVTNVVFMGMGEPMLNLKAVLGAHRCLNKDVEIGQRMITISTVGVPNTIKKLATHKLQSTLAFSIHAPNQKLRETIVPSAKSYPLDAIMK DCRDYFVQTSRRVSFEYALLAGVNDKTEHAIELAELLNNWGRNYHVNLIPFNPIEGSDYQRPTKRGVQNFASTLQARKITVSIRKTRGMDASAACGQLRN QFQKSPLLTAEPDISPPEAELAGSDLMRRYSPQQFSPPRRGYGGRPPRSPPRSPPRRGYGGGGGGGGYGRRRDQNQGSLLVRNIPLDCRQEELRTLFQRF GALRDVYMPKDYHTGEPRGFAFVQFVEPYDSIEAQRRVNGQIFAGREISVVVAAESRKRPEDMRHRTRSRGGGRGGGSSYYGHSRSRSLSRSRSPRYPES RSRCRSRSYSPAPRHRDYSASPERRHADPGPVRSPRGPPPRQQDGNLGRRSYSPRSPRGPPPQERDGNLVRRSYSPRSTRGPPPQERDGNLVRRSYSPAA YRKLDELEKGNGYSKKHSLEEGDWRRPSSPGRRSLSGSRSRSPDLSPTAGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	0	1
AT5G26940		DPD1	defective in pollen organelle ...		Lus10015216 [exp]	1.4	0.8828
AT5G37790			Protein kinase superfamily pro...		Lus10033588 [exp]	3.5	0.8726
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	4.6	0.8687
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	4.9	0.8793
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	6.0	0.8514
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	6.0	0.8808
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	7.1	0.8745
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	8.0	0.8848
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	8.1	0.8599
AT2G11890			adenylate cyclases (.1.2)		Lus10002992 [exp]	9.8	0.8660

Compare expression of checked genes

Lus10000953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.