Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07570 526 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 524 / 0 APK1B protein kinase 1B (.1.2.3) AT5G02290 514 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G39660 499 / 2e-177 BIK1 botrytis-induced kinase1 (.1) AT2G02800 471 / 5e-166 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 466 / 2e-164 PBL1 PBS1-like 1 (.1.2) AT1G14370 461 / 9e-162 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT5G15080 453 / 1e-157 Protein kinase superfamily protein (.1) AT3G01300 452 / 3e-157 Protein kinase superfamily protein (.1) AT3G28690 441 / 3e-154 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002697 [exp] 737 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10016537 [exp] 547 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 544 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10023794 [exp] 535 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 530 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 528 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10004964 [exp] 509 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 506 / 1e-179 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10012850 [exp] 458 / 1e-160 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056400 [exp] 577 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 575 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G031300 [exp] 550 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 544 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G240400 [exp] 543 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G148000 [exp] 481 / 9e-170 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G093700 [exp] 475 / 1e-167 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G194700 [exp] 449 / 3e-156 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 448 / 3e-156 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 444 / 1e-154 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10000954 pacid=23168449 polypeptide=Lus10000954 locus=Lus10000954.g ID=Lus10000954.BGIv1.0 annot-version=v1.0 ATGGGGGGGAAGAAAGAGGGGAGTACTGGGTCAACAAGCAGGGTATCAGCATCAGGGGGGACTGTTCCATATACTCCTCGGACAGAAGGGGAGATATTGC AGTCAAGCAACTTGAAGAGCTTTACGTTTGGTGATCTAAAGGCATCTACAAGGAACTTCCGTCCGGATAGTTTGATAGGGGAAGGTGGGTTTGGTTGTGT TTTCAAAGGATGGGTTGATGAGAATTCACTCACTGCTGTCAGGCCTGGCACTGGCTTGGTCATTGCTGTCAAAAGACTCAACCAAGAGAGCTTCCAGGGT CACCAGGAATGGCTGGCGGAAATCAATTACCTGGGGCAGCTGGACCATCCAAACCTTGTGAAATTGGTCGGCTACTGCATTGAGGATGAGCACAGGCTTC TAGTTTACGAGTTCATGCCTAAGGGCAGCTTGGAAAATCATCTTTTCAGAAGGGCTTCTTATTTCCAACCTTTATCTTGGAATCTTCGTATGAAGGTTGC AGTTGATGCTGCCAGAGGTCTAGCATTCCTTCACAGCGACAAGGCCAAAGTTATCTACCGCGATTTCAAGACTTCTAACATCCTCCTCGATTCGAACTAC AATGCAAAACTGTCCGATTTCGGGTTAGCAAAGGACGGTCCATCGGGAAGCAAGAGCCACGTCTCGACAAGGGTGATGGGGACATACGGGTATGCAGCAC CGGAGTACATGGCGACAGGACATCTAACATCAAAGAGCGATGTGTACAGTTTCGGAGTGGTGCTGCTGGAGATAATGTCGGGAAGGAGAGCGATAGACAA GAACAGGCCGTCGAGGGAGAAGAGCTTAGTGGATTGGGCAAGGCCGTACCTTGGGAGCAAAAGGAAGATATACCAAGTGATGGATGCAAGGATTGAAGGG CAGTACACGGGAAGTTGCGCGATGAAAGTGTCTACGTTAGCAGTGAGATGCCTGTCAATGGAGGCCAAGTACAGACCTAACATGGAGGAAGTTGTTAGAA TTCTGGAGCAGATTTACCACGAGTGCAGCGAGAGTAGTGAAGGTATGAAAGGGAACAACAACAACAATAATCATCAAAAGGCAAGAACAAGGAAGAATGT GAATGGAGTTGTTGTGGTTGGTAGTGGCAAAGCTTCTCCCAGACCTGCAGCATCTCCTCTCCGAGTATAG
AA sequence Show only first row Show all	>Lus10000954 pacid=23168449 polypeptide=Lus10000954 locus=Lus10000954.g ID=Lus10000954.BGIv1.0 annot-version=v1.0 MGGKKEGSTGSTSRVSASGGTVPYTPRTEGEILQSSNLKSFTFGDLKASTRNFRPDSLIGEGGFGCVFKGWVDENSLTAVRPGTGLVIAVKRLNQESFQG HQEWLAEINYLGQLDHPNLVKLVGYCIEDEHRLLVYEFMPKGSLENHLFRRASYFQPLSWNLRMKVAVDAARGLAFLHSDKAKVIYRDFKTSNILLDSNY NAKLSDFGLAKDGPSGSKSHVSTRVMGTYGYAAPEYMATGHLTSKSDVYSFGVVLLEIMSGRRAIDKNRPSREKSLVDWARPYLGSKRKIYQVMDARIEG QYTGSCAMKVSTLAVRCLSMEAKYRPNMEEVVRILEQIYHECSESSEGMKGNNNNNNHQKARTRKNVNGVVVVGSGKASPRPAASPLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	0	1
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	1.0	0.9299
AT2G28060			5'-AMP-activated protein kinas...		Lus10008427 [exp]	1.7	0.9096
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	3.2	0.9107
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	4.0	0.9018
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	5.2	0.8964
					Lus10007298 [exp]	6.2	0.8833
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	7.1	0.9008
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	9.2	0.8996
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039456 [exp]	10.2	0.8920
AT1G67850			Protein of unknown function (D...		Lus10006472 [exp]	10.2	0.8776

Compare expression of checked genes

Lus10000954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.