Plant FIBer expression Database

Lus10000955 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12530 189 / 7e-61 PSF2 PSF2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002696
[exp]
176 / 2e-55 AT3G12530 175 / 5e-55 PSF2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G203600
[exp]
234 / 5e-79 AT3G12530 269 / 3e-92 PSF2 (.1.2)
Potri.008G056200
[exp]
179 / 1e-57 AT3G12530 199 / 2e-65 PSF2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05916 Sld5 GINS complex protein
Representative CDS sequence
>Lus10000955 pacid=23168453 polypeptide=Lus10000955 locus=Lus10000955.g ID=Lus10000955.BGIv1.0 annot-version=v1.0
ATGGCCGGTCAGTCTGGCTCCCAACTCTCCCTCTTCACCCCGGAGGAGGTGGAGTTCATGGCCGAAGATGAGTTGGTTGAGATCGTCCCCAATCTGAGAA
TGGATTCTCTTAATTTCATCTGTTTCACGCTAATGCGACTACTGATTAGCACTAACTTGTCAGGGAGATTACGGTCCCTTTTATCCACAATAGCCGCCCA
AGTTCCTTTATGGTTGGCTGGTGCGCTGAAGAAGCGAGGCAAGTGGACCATCCGGCCTCCGCAGTGGATGTCCATAGGTGCTGAAGTGGAGAGAGAATCT
CATGCATTTCAGCCATTGCCCTTCCATTATATTGAAATTTCCAGGCTTCTTTTTTATCATGCCCGTGATGATATTCCTGATATATACACGGTGCGGTCGC
TCATAGAGGACATCAGGGACGTGAGGTTTCACAAGGTGGAAACAAATTTGGAAAACTTCACTGCATTTGCAGTAACGTGGAAAAATATGGCTGCTATAGG
AATCTACGTCCACGGTAATATGCTTGGGTATGAGCTCAAATCATCTGAAATCAAGCTGGAAACGTCAGCCTCAGCAGGAACCCTCAAAAGATAG
AA sequence
>Lus10000955 pacid=23168453 polypeptide=Lus10000955 locus=Lus10000955.g ID=Lus10000955.BGIv1.0 annot-version=v1.0
MAGQSGSQLSLFTPEEVEFMAEDELVEIVPNLRMDSLNFICFTLMRLLISTNLSGRLRSLLSTIAAQVPLWLAGALKKRGKWTIRPPQWMSIGAEVERES
HAFQPLPFHYIEISRLLFYHARDDIPDIYTVRSLIEDIRDVRFHKVETNLENFTAFAVTWKNMAAIGIYVHGNMLGYELKSSEIKLETSASAGTLKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12530 PSF2 PSF2 (.1.2) Lus10000955
[exp]
0 1
AT3G17030 Nucleic acid-binding proteins ... Lus10016902
[exp]
2.2 0.8849
AT5G65700 BAM1 BARELY ANY MERISTEM 1, Leucine... Lus10011576
[exp]
5.2 0.7798
AT1G08840 EMB2411 embryo defective 2411, DNA rep... Lus10010991
[exp]
6.3 0.8388
AT3G23920 BAM1, BMY7, TR-... BETA-AMYLASE 7, beta-amylase 1... Lus10004398
[exp]
8.3 0.7500
AT4G25540 ATMSH3, MSH3 homolog of DNA mismatch repair... Lus10027452
[exp]
9.9 0.7396
AT4G11410 NAD(P)-binding Rossmann-fold s... Lus10028781
[exp]
17.0 0.7485
AT5G65700 BAM1 BARELY ANY MERISTEM 1, Leucine... Lus10011577
[exp]
17.3 0.6795
AT2G37690 phosphoribosylaminoimidazole c... Lus10005526
[exp]
18.6 0.7720
AT2G20980 MCM10 minichromosome maintenance 10 ... Lus10014124
[exp]
19.7 0.7745
AT4G25540 ATMSH3, MSH3 homolog of DNA mismatch repair... Lus10027453
[exp]
20.3 0.7253

Lus10000955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.