Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39650 265 / 2e-89 Protein of unknown function (DUF506) (.1) AT4G14620 138 / 3e-39 Protein of unknown function (DUF506) (.1) AT2G38820 128 / 7e-36 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G22970 124 / 8e-35 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G32480 118 / 3e-32 Protein of unknown function (DUF506) (.1) AT3G07350 116 / 2e-31 Protein of unknown function (DUF506) (.1) AT3G25240 112 / 6e-30 Protein of unknown function (DUF506) (.1) AT3G54550 112 / 9e-30 Protein of unknown function (DUF506) (.1) AT2G20670 111 / 2e-29 Protein of unknown function (DUF506) (.1) AT1G12030 99 / 6e-25 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002695 [exp] 445 / 4e-160 AT2G39650 313 / 4e-107 Protein of unknown function (DUF506) (.1) Lus10023412 [exp] 300 / 6e-103 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10040293 [exp] 285 / 4e-97 AT2G39650 270 / 5e-90 Protein of unknown function (DUF506) (.1) Lus10006634 [exp] 134 / 3e-37 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 135 / 5e-37 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 132 / 7e-37 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 130 / 5e-36 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 127 / 1e-34 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 125 / 3e-34 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056100 [exp] 327 / 8e-114 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 313 / 6e-108 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1) Potri.002G046300 [exp] 142 / 1e-40 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 139 / 2e-39 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 128 / 3e-35 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.007G109700 [exp] 121 / 2e-33 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 121 / 1e-32 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 117 / 3e-32 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.019G099600 [exp] 116 / 2e-31 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 114 / 4e-31 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10000956 pacid=23168455 polypeptide=Lus10000956 locus=Lus10000956.g ID=Lus10000956.BGIv1.0 annot-version=v1.0 ATGTCACTAGTTCATTCTCTGATCGTCTCATTAAAAGATACGGACCTTCGTCTTGTGGAGTCAGGTTCTTGTAATGCCAGCTGCATCAGGTTTTCTTTGG TGAAGCTGCTGCGATTTTCTGGATATGATGCTGCTGTCTGCTCATCTAAATGGCAGGGCATTGCCAAAGTCCCAGGAGGTGATTATGAGTACATTGATGT GATCAATCTCAATGATGCCGGAAGCTCGGAACGTCTGATAATTGATATAGACTTCAGAAGTCACTTTGAAATAGCAAGAGCAGTTGACTCGTACGATCGA CTACTGCAGTCACTTCCGGTTGTTTATGTGGGATCATTAGGTAGGCTGAAGCAGTATCTCCAGGTGATGGTTGAAGCGGCCAAGTCATCGCTTAAACAAA ACTCGATGCCTCTTCCTCCTTGGAGGTCCCTTGCATATTTGCAAGCGAAATGGCAGTCACCACATCAGAGACACTTCTTCGCTCCAGATGGGCACAGCAT GTCCACGTCTGGGGGGCACAACCAGTGCAGTGGGCAACTCAGGAGGCTGCAATCCTCTCTTCACTCTGAAGTTGAGGAAGAACGTCTCCTGAAGCCTCTG AAAAACGACAATAACAGACGGGCAAAGCCCGATAGACGTAGATACTCCTTGTTCAGGGGTCTCTGA
AA sequence Show only first row Show all	>Lus10000956 pacid=23168455 polypeptide=Lus10000956 locus=Lus10000956.g ID=Lus10000956.BGIv1.0 annot-version=v1.0 MSLVHSLIVSLKDTDLRLVESGSCNASCIRFSLVKLLRFSGYDAAVCSSKWQGIAKVPGGDYEYIDVINLNDAGSSERLIIDIDFRSHFEIARAVDSYDR LLQSLPVVYVGSLGRLKQYLQVMVEAAKSSLKQNSMPLPPWRSLAYLQAKWQSPHQRHFFAPDGHSMSTSGGHNQCSGQLRRLQSSLHSEVEEERLLKPL KNDNNRRAKPDRRRYSLFRGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39650			Protein of unknown function (D...		Lus10000956 [exp]	0	1
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	1.4	0.9527
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	14.9	0.9175
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039469 [exp]	20.6	0.9490
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10041702 [exp]	20.7	0.9460
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	21.5	0.9239
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10004620 [exp]	22.7	0.8975
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	23.2	0.9463
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	24.3	0.9163
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10030321 [exp]	25.1	0.9236
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	25.7	0.9482

Compare expression of checked genes

Lus10000956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.