Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 209 / 1e-67 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT3G45960 142 / 1e-41 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G38400 124 / 1e-34 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 123 / 5e-34 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT1G65680 119 / 3e-32 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G20750 114 / 2e-30 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT4G28250 113 / 3e-30 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G45110 113 / 4e-30 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 100 / 2e-25 EXPB6 beta expansin 6 (.1) AT3G60570 80 / 9e-18 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040149 [exp] 445 / 7e-161 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10001010 [exp] 312 / 5e-108 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10011012 [exp] 308 / 3e-106 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10011013 [exp] 239 / 1e-79 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10001009 [exp] 238 / 7e-79 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10000958 [exp] 230 / 7e-76 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10030931 [exp] 167 / 4e-51 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10003336 [exp] 150 / 4e-44 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 148 / 2e-43 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 247 / 1e-82 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 237 / 1e-78 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 159 / 4e-48 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.004G181700 [exp] 158 / 2e-47 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.009G141400 [exp] 157 / 6e-47 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G147200 [exp] 156 / 9e-47 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.013G134300 [exp] 124 / 2e-34 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 123 / 6e-34 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 121 / 3e-33 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.008G057100 [exp] 69 / 1e-13 AT2G39700 459 / 6e-166 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10000957 pacid=23148133 polypeptide=Lus10000957 locus=Lus10000957.g ID=Lus10000957.BGIv1.0 annot-version=v1.0 ATGAGCTGTGTTCTTGAGATCTGTCTCCTTGCTTTTGCTTCCCTACTAACCACTGCGTCATCCCAATTCCACCCATCAAAAGCTGTGTTCTACCGTAGCC CTGATTGCTTGGGCACTCCAAGTGGAGCTTGTGGTTATGGCATCCATGGAAGAACCATCAACAATGCTCTAGTAGGCGGCGTTTCTGGACTCTGGAACAA TGGAACTGGCTGCGGTGCTTGCTACCAGGTGAGGTGTAAAGCTGCAGATCTATGCAATCAGGAAGGGATAACAGTAGTAGTGACTGATAACGCTGCAGCA GACGATGCTCATTTCGTCCTAAGCCCACACGCTTACGGCAGCATGGCTTACCCGAGTAAGACCACCGAGCTCTACTTATTAGGGGTTGTGGACGTGGATT ACCAACGTACACCATGCCGGTTCCCTGGTTACAACCTAATCTTCAAGGTGGTAGAGCATAGCAGGTTCCCTCACTACTTGGCCATAGTTCCTATGTTCTA CAATGGGGAACAAGATATACATGGTGTCGAATTACAGCCGGAAGGTGGAGATAAATGGATAAGTATGAACAAGGCGTGGGGTGCGGTTTGGGACTTGCCT GTTCCACCAACTGGTGCTCTTAAGCTTAGGGTCAAAGTACGCAATGGAAATGGAGAGGAGAAATTGATAGAAGCAAACAAGGCCTTACCGAGTTCATGGA AGCCTGGTGCTGGTTATGATTCCCATGTCCAGCTTTCTTAA
AA sequence Show only first row Show all	>Lus10000957 pacid=23148133 polypeptide=Lus10000957 locus=Lus10000957.g ID=Lus10000957.BGIv1.0 annot-version=v1.0 MSCVLEICLLAFASLLTTASSQFHPSKAVFYRSPDCLGTPSGACGYGIHGRTINNALVGGVSGLWNNGTGCGACYQVRCKAADLCNQEGITVVVTDNAAA DDAHFVLSPHAYGSMAYPSKTTELYLLGVVDVDYQRTPCRFPGYNLIFKVVEHSRFPHYLAIVPMFYNGEQDIHGVELQPEGGDKWISMNKAWGAVWDLP VPPTGALKLRVKVRNGNGEEKLIEANKALPSSWKPGAGYDSHVQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	0	1
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	1.4	0.9289
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10013957 [exp]	2.8	0.8818
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	3.2	0.9057
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	3.5	0.8303
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	4.6	0.8950
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	5.0	0.8778
AT5G50800		SWEET13, AtSWEE...	Nodulin MtN3 family protein (....		Lus10005935 [exp]	5.0	0.7944
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	5.3	0.8214
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10004723 [exp]	5.4	0.7807
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	7.7	0.8708

Compare expression of checked genes

Lus10000957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.