Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 303 / 2e-104 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 162 / 3e-49 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 160 / 4e-49 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT3G45970 159 / 4e-48 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT2G20750 125 / 8e-35 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 125 / 8e-35 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT4G28250 121 / 3e-33 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G45110 99 / 7e-25 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 97 / 2e-24 EXPB6 beta expansin 6 (.1) AT5G56320 93 / 2e-22 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001009 [exp] 387 / 9e-138 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 383 / 4e-136 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000957 [exp] 248 / 6e-83 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10040149 [exp] 246 / 3e-82 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10011012 [exp] 245 / 1e-81 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10001010 [exp] 245 / 2e-81 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10040148 [exp] 232 / 6e-78 AT4G17030 137 / 7e-41 expansin-like B1 (.1) Lus10030931 [exp] 205 / 9e-66 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10003336 [exp] 181 / 2e-56 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 357 / 7e-126 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 347 / 8e-122 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 198 / 3e-63 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 193 / 4e-61 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.009G141400 [exp] 190 / 7e-60 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 187 / 5e-59 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.013G134300 [exp] 129 / 4e-36 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 125 / 1e-34 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 117 / 2e-31 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.008G088300 [exp] 92 / 5e-22 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10000958 pacid=23148132 polypeptide=Lus10000958 locus=Lus10000958.g ID=Lus10000958.BGIv1.0 annot-version=v1.0 ATGGCACTTCCAGGGCTTAAAAACGAAGCAATTATGTTATTTATAATGATGACCAGCTTTGTGGCCGGCGGCGATGACTTTGTGTGCTCAAGAGCTACTT ACTACGGCAGCCCTGATTGCTTAGGGACTCCACGTGGAGCTTGTGGGTATGGTGAATTTGGAAGGACGGTGAATGATGCTAACGTGGCTGGTGTTTCCAG GCTCTGGAAGAATGGCACCGGCTGTGGTTCTTGCTATCAGGTGAGATGCAAGGCACCCCATGTGTGCAACGACGACGGAGTGAACATAGTAGTCACTGAC TACGGCGAAGGAGACCACACCGACTTCATCCTCAGCCCACGCGCCTACGCCGAGATGGCGCGTCCCAACTGCGCCCCGGAGCTCTACTCATACGGCGCCG TAGAAGTCGAGTACCGTAGAATACCATGCAAGTACGCATCCGGCTACAATATACAGTTCAAGGTTAAAGAGCACAGCAAATTCCCTCACTACTTGGCCAT CGTCCTCCTCTACCAAGCTTCCCAATACGACGTCCTAACTGTCGACATGTGGCAGGAGGATTGCAAGGAATGGAGAGGGATGAGGAGGGCATATGGCGCC GTTTGGGACATTGTTACGCCGCCAAAGGGTCCGATTACATTGAGGTTCCAAGTGACGAGCAGTGTGGAAGTGAAATGGATCGAGGCCAAAGGTGTTATAC CTTGTGAATGGGAAGCTGGTGCTACTTATGATTCAAATCTTCAGCTTTAA
AA sequence Show only first row Show all	>Lus10000958 pacid=23148132 polypeptide=Lus10000958 locus=Lus10000958.g ID=Lus10000958.BGIv1.0 annot-version=v1.0 MALPGLKNEAIMLFIMMTSFVAGGDDFVCSRATYYGSPDCLGTPRGACGYGEFGRTVNDANVAGVSRLWKNGTGCGSCYQVRCKAPHVCNDDGVNIVVTD YGEGDHTDFILSPRAYAEMARPNCAPELYSYGAVEVEYRRIPCKYASGYNIQFKVKEHSKFPHYLAIVLLYQASQYDVLTVDMWQEDCKEWRGMRRAYGA VWDIVTPPKGPITLRFQVTSSVEVKWIEAKGVIPCEWEAGATYDSNLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000958 [exp]	0	1
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10017358 [exp]	5.5	0.8436
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	14.4	0.8755
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10005854 [exp]	14.8	0.8899
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	28.4	0.8502
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10018039 [exp]	31.9	0.7793
					Lus10007776 [exp]	33.0	0.8379
					Lus10007977 [exp]	38.5	0.8454
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	57.4	0.8288
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	66.7	0.7835
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	68.5	0.8030

Compare expression of checked genes

Lus10000958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.