Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17600 120 / 3e-33 LIL3:1 Chlorophyll A-B binding family protein (.1) AT5G47110 0 / 1 LIL3:2 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001008 [exp] 121 / 1e-33 AT4G17600 270 / 2e-91 Chlorophyll A-B binding family protein (.1) Lus10040147 [exp] 0 / 1 AT4G17600 289 / 1e-98 Chlorophyll A-B binding family protein (.1) Lus10011016 [exp] 0 / 1 AT4G17600 273 / 1e-92 Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083500 [exp] 127 / 5e-36 AT4G17600 300 / 3e-103 Chlorophyll A-B binding family protein (.1) Potri.001G151300 [exp] 0 / 1 AT4G17600 268 / 2e-90 Chlorophyll A-B binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000959 pacid=23148136 polypeptide=Lus10000959 locus=Lus10000959.g ID=Lus10000959.BGIv1.0 annot-version=v1.0 ATGTCAATTTCCACGACGCTACTCTCTCCGCCTCCGCCGCCGGCATCCACTCGCCGCATCTTTCAGTCACCTTCTCGTGCCGCTCTCTTCCTCAAACCCA CGCCAAACGCATTCCTACGTCTCTCCGCCCCCAGAGCCTCGGCCGACAACGGTTCGGGAGTTTCCTCCGCTTCCGCTTCCGCCACCGTCGCAGTAGAGGA CGAGCCCGCGCAACCCGCCAGGACTTGCAGCAGTTCCGCAAGGATGGGACCACCACCACCGATTGGGATGCCCTCATCGACGCTGAGGCCAGGAGGAGGA AATGGCTACAGGACAACCCTGAATCGACGAACAATGATGAACCTATTCTCTTCGACACCTCCATTATACCATGGTGGTTTTGGATCAAGAGATACCATCT CCCTGAAGCTGAACTACTCAATGGTTGGCCGTGCTGCAATGATAGGGTTCTTTATGGCTTACTTTGTGGATAGCTTGACCGGTGTAGGCCTAGTCGACCA AATGGGCAACTTCTTCTGCAAAACACTCTTGTTCGGGGCTGTCGTTGGAGTGCTCGTGTTCCGAAAGAACGAGGATGTAGAAACTGTAAAGAAGTTGATT GAAGAGACAACCTTCTATGACAAGCAATGGCAGGCAGCTTGGAAGGATGAGAGCACCAGCAATTCTAAAAAGGACTAG
AA sequence Show only first row Show all	>Lus10000959 pacid=23148136 polypeptide=Lus10000959 locus=Lus10000959.g ID=Lus10000959.BGIv1.0 annot-version=v1.0 MSISTTLLSPPPPPASTRRIFQSPSRAALFLKPTPNAFLRLSAPRASADNGSGVSSASASATVAVEDEPAQPARTCSSSARMGPPPPIGMPSSTLRPGGG NGYRTTLNRRTMMNLFSSTPPLYHGGFGSRDTISLKLNYSMVGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFGAVVGVLVFRKNEDVETVKKLI EETTFYDKQWQAAWKDESTSNSKKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	0	1
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	1.7	0.9668
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	3.2	0.9511
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	3.5	0.9560
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10006116 [exp]	3.5	0.9477
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	3.6	0.9325
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Lus10016781 [exp]	4.0	0.9423
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	4.2	0.9412
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10000063 [exp]	4.5	0.9194
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	4.9	0.9534
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	5.7	0.9533

Compare expression of checked genes

Lus10000959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.