Plant FIBer expression Database

Lus10000960 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30020 597 / 0 PA-domain containing subtilase family protein (.1)
AT2G19170 596 / 0 SLP3 subtilisin-like serine protease 3 (.1)
AT1G62340 548 / 0 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1)
AT5G44530 543 / 0 Subtilase family protein (.1)
AT1G30600 536 / 3e-179 Subtilase family protein (.1)
AT4G20430 536 / 7e-179 Subtilase family protein (.1.2)
AT4G34980 307 / 2e-92 SLP2 subtilisin-like serine protease 2 (.1)
AT4G10520 288 / 2e-85 Subtilase family protein (.1)
AT3G14240 284 / 9e-84 Subtilase family protein (.1)
AT2G05920 278 / 7e-82 Subtilase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040146
[exp]
1556 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1)
Lus10001006
[exp]
1181 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1)
Lus10011018
[exp]
842 / 0 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
Lus10006973
[exp]
590 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1)
Lus10023389
[exp]
543 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2)
Lus10015559
[exp]
540 / 2e-180 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1)
Lus10038416
[exp]
538 / 2e-179 AT5G44530 1169 / 0.0 Subtilase family protein (.1)
Lus10001310
[exp]
508 / 7e-169 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1)
Lus10008060
[exp]
322 / 4e-97 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G151100
[exp]
1174 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1)
Potri.006G076200
[exp]
605 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1)
Potri.018G143400
[exp]
601 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1)
Potri.011G155400
[exp]
550 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2)
Potri.001G440300
[exp]
548 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2)
Potri.011G010700
[exp]
357 / 5e-114 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1)
Potri.014G026600
[exp]
303 / 4e-91 AT5G67360 546 / 0.0 Subtilase family protein (.1)
Potri.007G045100
[exp]
301 / 3e-90 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Potri.014G026700
[exp]
300 / 7e-90 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Potri.009G133400
[exp]
299 / 2e-89 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0570 PPP-I PF05922 Inhibitor_I9 Peptidase inhibitor I9
CL0570 PF00082 Peptidase_S8 Subtilase family
Representative CDS sequence
>Lus10000960 pacid=23148137 polypeptide=Lus10000960 locus=Lus10000960.g ID=Lus10000960.BGIv1.0 annot-version=v1.0
ATGGCTTCCATTCTCGCGATTCTTCTCGGCATATCTATGATCAACATTCTCAGCCTTGTTTCGGTCGAACCCAAAGTTTACATGATTCTGATGGAAGAGG
AGCCTGTTTTCTCTGTCAAGTCCAATACTTCTCATTCCAGGATTCAGGAGGAGGAGGTCATGGCATACAAACAGAGGCTAATGATTAGCCATGACTTATT
CTTGGAATCCATCCTCAAGCACAGCAACTACACCAAGCTCTATAGCTATACTCACTTGCTTAATGGCTTTGCTGTCCATGTCGACTCCGATGAGGTGATC
AGTGTTCTAAAGAGCGCAAGGGGAGTGAGAGTTGTTCATGAAGACGTCAAAATGCAGAAGCTAACAACACATACACCAGACTTTCTAGGGATACCTACTG
GTGTGTGGCCGGCTTTAGGAGGGCCCGAAAACTCTGGAGATGGGGTCGTTATAGGCTTGATCGACACAGGCATAAACCCTTTGCATCCCAGTTTCAGGAC
AAACCTGTCCCCGAGGTTCAACACCACCATCTACAGCACCACTTCAAGATTCAAAGGCAAATGTGACACTGGAGTTCAGTTCCCTCCCACGTCATGCAAT
GGGAAGATCGTTGGTGCACAGTATTTCGCCCGTGCAGCCATTGCAGCTGGCGATTTCAATGCTACCCGTGATTATGTATCTCCTTTCGATGCTGATGGTC
ATGGAAGGCAAGTAACAGATGTCACTGCAAATCTTTTCCATACAGCTTCCACAGCTGCTGGGAACCATCACATACCAGTTATAGCCAATGGCTTCAACTA
TGGATATGCAAGTGGTATGGCTCCGGGGGCCAGGATCGCTGTGTACAAAGCTCTATATACATTTGGAGGTTACATGTCAGATGTTGTTGCAGCAGTTGAT
CAGGCTGTAGAAGATGGAGTCGACATACTAAGCCTTTCGATAGGGCCATCGAGTGTCCCACCAGGTCCAAGTGCTTTCCTTAATGTGCTAGAAATGGAGC
TCTTGTTTGCTACAAAAGCGGGTATCTTTGTAGTTCAAGCAGCCGGCAATGGTGGCCCTTCTTCAAGTTCAATCCTTTCTTTCAGCCCATGGATCACAAC
AGTTGCAGCATCCATCACCGATCGCAGATACAACAATACCATCATCTTAGGAAATGGTTTAAGCTTCTCCGGCACTGGCCTTGCCCCACCAACTTCAGGA
ACAGCGTCAGTCCCTATAGCAGCAGCAGCAGATGTGTCTCAGAGGAACACTACAAGTGTTATGGATATAGAAAGCTGCCAACATCCAGAACATTTCATCC
CATCACTGGCTCATCAGAAGCTCATTATCTGTACGTACAACTTTGACTTTGAGTACGAAGCTGCAAGCATTGCGACTGTAGCAGACACTATACAGAAGGT
AGGAGCAACAGGGTTCATAATCACAATGGACCCAGCTATTGGCTCTGAGCAAGTGAAAGGCACTACTATGACCATGAAAGTTCCTGCAATTATCCTCAAC
AACATGCAAGCTTCCTCGGCTTTATGGGAGTATTATAACTCAAACACGAAAAGAGGAACGAACGGGGAAGCTACGGTGTTTTCTGCAGAGGCTAGAATAT
TGGGTGGAAGACAAGCATTTTTCACTGGACAAGCACCAGTCGTGGCATCCTATTCATCTAGAGGTCCTGATGTAAACAATGCACTGTTGCAGACTGCTGA
TGTCCTGAAACCAAACATCATGGCTCCAGGTTCCTCCATTTGGGCTGCGTGGAGCCCGAACAGCGAAGGAGACCCTTACATAAAGGGGCAAAACTTTGCG
CTGGTATCAGGTACCAGCATGGCGACACCACACATTGCTGGAGTTGCAGCCCTCATAAAGCACAAACACCCCAAATGGAGTCCAGCGGCAATCACCTCGG
CGATGATGACAACTGCTGACAGAATCGACCGCCACTCACACTCTCCAATCATGGCACAATCAACCAACCAGCTAGCTCCAGCTACACCCTTTGATCTCGG
GTCGGGGTCAGTCAACCCTTCCAAGGCTATCGACCCAGGGCTCGTGTTCAATGCCCAGTTTGACCACTATGTCCAGTTTCTCTGTTCGGTTCCAGGTGTT
GATGATGATTCTGTAAGAAGAGCACTAGGGAGCGGGTGCCCACCGCGAAGGAGAAAGGGCGCATCTTGGTGCTCAGATTTGAACACACCGAGCGTGACAA
TCTCCAACCTTGTCGGGTCGAGGAAAGTGGTCAGGACAGTGACCAATGTGGGTGCGATGGAAGAGTTTTACCGAGTCACGGTTAGGAAACCGGTTGGGGT
TAACATCACCGTGACCCCTAGGTTCTTTATTGTAAGGGGCCACACTTCGAGGCGTCTTAGGATTATGCTGCACGCCACCAACGCCACGAAGAGTTACACG
TTCGGGGAGATGGTGATGCATGGGAGCAGGAGGCATGTGGTTAGAGTTCCTATTGCTGTTTATGTTAGTAGTTAG
AA sequence
>Lus10000960 pacid=23148137 polypeptide=Lus10000960 locus=Lus10000960.g ID=Lus10000960.BGIv1.0 annot-version=v1.0
MASILAILLGISMINILSLVSVEPKVYMILMEEEPVFSVKSNTSHSRIQEEEVMAYKQRLMISHDLFLESILKHSNYTKLYSYTHLLNGFAVHVDSDEVI
SVLKSARGVRVVHEDVKMQKLTTHTPDFLGIPTGVWPALGGPENSGDGVVIGLIDTGINPLHPSFRTNLSPRFNTTIYSTTSRFKGKCDTGVQFPPTSCN
GKIVGAQYFARAAIAAGDFNATRDYVSPFDADGHGRQVTDVTANLFHTASTAAGNHHIPVIANGFNYGYASGMAPGARIAVYKALYTFGGYMSDVVAAVD
QAVEDGVDILSLSIGPSSVPPGPSAFLNVLEMELLFATKAGIFVVQAAGNGGPSSSSILSFSPWITTVAASITDRRYNNTIILGNGLSFSGTGLAPPTSG
TASVPIAAAADVSQRNTTSVMDIESCQHPEHFIPSLAHQKLIICTYNFDFEYEAASIATVADTIQKVGATGFIITMDPAIGSEQVKGTTMTMKVPAIILN
NMQASSALWEYYNSNTKRGTNGEATVFSAEARILGGRQAFFTGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPNSEGDPYIKGQNFA
LVSGTSMATPHIAGVAALIKHKHPKWSPAAITSAMMTTADRIDRHSHSPIMAQSTNQLAPATPFDLGSGSVNPSKAIDPGLVFNAQFDHYVQFLCSVPGV
DDDSVRRALGSGCPPRRRKGASWCSDLNTPSVTISNLVGSRKVVRTVTNVGAMEEFYRVTVRKPVGVNITVTPRFFIVRGHTSRRLRIMLHATNATKSYT
FGEMVMHGSRRHVVRVPIAVYVSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30020 PA-domain containing subtilase... Lus10000960
[exp]
0 1

Lus10000960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.