Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040145 [exp] 297 / 5e-104 ND 40 / 4e-04 Lus10011019 [exp] 135 / 5e-37 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10007598 [exp] 117 / 5e-33 ND 42 / 2e-04 Lus10027768 [exp] 103 / 6e-28 ND / Lus10035527 [exp] 102 / 2e-27 AT4G24640 40 / 4e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10000822 [exp] 45 / 1e-05 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 40 / 0.0004 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012800 [exp] 86 / 2e-21 ND / Potri.005G022200 [exp] 82 / 1e-19 ND / Potri.013G012733 [exp] 82 / 1e-19 ND / Potri.005G195200 [exp] 81 / 4e-19 AT5G64620 42 / 7e-05 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.005G022250 [exp] 71 / 1e-15 ND / Potri.013G012766 [exp] 71 / 1e-15 ND / Potri.005G022300 [exp] 69 / 1e-14 ND / Potri.005G022400 [exp] 68 / 3e-14 ND / Potri.001G073350 [exp] 59 / 7e-11 ND / Potri.002G191500 [exp] 47 / 9e-07 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10000961 pacid=23148130 polypeptide=Lus10000961 locus=Lus10000961.g ID=Lus10000961.BGIv1.0 annot-version=v1.0 ATGGCTCCCAAGATCGTACATCTTCTTCCCTTGGCAGCCCTAATCTTAATCCTCTGCCTCCCATCCCAAACCGAATCACACTCGCCGTCGTCCACCTCCG ACTTCCACAAATCCGTATGCCAGAAGAGCGACGACTACGCAGGGTGCATGAGGACCCTGAGATTGGACCCCAGGCTGGCCGCCACCGGCGACATTAATAC CCTGGCGAAGGTAGCGATGGACAAGGCGCAGAGGAAGTCGATGACGTTGAGCGACAAGTTTGCGAAGATGGAGAACGAGAACCCCGATCCGAAGGTGAAG GAAGCGCTGAAGATGTGCGCTTTCGATTTCAAGGACGCGAAGATCTTCTTCAACCCTAGGTTGCTTGGGGATCCGACAGGGAGCATGGATATTCATTCGG CGTTGGACAATTGGCAGAACTGCGAGACTTTAATGGAGCAGAATCCGGATCTGCAGAAGATGGCTCCTGCGCTGAGGAAGTGGAAGCACCTGTATGCGAT TGCGAATGGGGCGGTTGTTTACGCCGAAGATGAATCTGGCGGTGGTGGCGGTGGGGATTACCCTTAA
AA sequence Show only first row Show all	>Lus10000961 pacid=23148130 polypeptide=Lus10000961 locus=Lus10000961.g ID=Lus10000961.BGIv1.0 annot-version=v1.0 MAPKIVHLLPLAALILILCLPSQTESHSPSSTSDFHKSVCQKSDDYAGCMRTLRLDPRLAATGDINTLAKVAMDKAQRKSMTLSDKFAKMENENPDPKVK EALKMCAFDFKDAKIFFNPRLLGDPTGSMDIHSALDNWQNCETLMEQNPDLQKMAPALRKWKHLYAIANGAVVYAEDESGGGGGGDYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000961 [exp]	0	1
AT1G78190			Trm112p-like protein (.1)		Lus10017505 [exp]	1.7	0.7842
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	5.5	0.7834
AT4G37090			unknown protein		Lus10019656 [exp]	7.7	0.7751
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	10.4	0.7463
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	11.6	0.7801
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	11.8	0.7737
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	12.5	0.7204
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	18.5	0.7745
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	20.2	0.7684
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	22.8	0.7656

Compare expression of checked genes

Lus10000961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.