Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44730 106 / 1e-25 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 67 / 3e-12 Trihelix Homeodomain-like superfamily protein (.1) AT4G17060 66 / 6e-12 FIP2 FRIGIDA interacting protein 2 (.1) AT3G58630 53 / 1e-07 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 53 / 1e-07 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G54390 50 / 1e-06 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 47 / 2e-05 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040141 [exp] 536 / 0 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10011020 [exp] 274 / 2e-89 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10001004 [exp] 159 / 8e-46 AT4G17060 80 / 4e-17 FRIGIDA interacting protein 2 (.1) Lus10022789 [exp] 69 / 4e-13 AT3G24860 141 / 7e-40 Homeodomain-like superfamily protein (.1) Lus10011851 [exp] 68 / 2e-12 AT3G24860 140 / 1e-39 Homeodomain-like superfamily protein (.1) Lus10015282 [exp] 61 / 5e-11 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 62 / 2e-10 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 61 / 4e-10 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 59 / 1e-09 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083800 [exp] 214 / 4e-65 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 164 / 6e-46 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 103 / 2e-24 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G139500 [exp] 103 / 2e-24 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G243300 [exp] 75 / 7e-15 AT3G24860 167 / 8e-50 Homeodomain-like superfamily protein (.1) Potri.001G113600 [exp] 65 / 1e-11 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 60 / 6e-10 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 49 / 3e-06 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 48 / 6e-06 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000963 pacid=23148138 polypeptide=Lus10000963 locus=Lus10000963.g ID=Lus10000963.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCCGTAGCCGCAGACCCCAGTTCTCGAAAAGTCCCTCCCCCTTGCTGGACGAGGGAGGAGACCGTCGAGCTAATCAAAGCCTACCGCGACA AATGGTTCGCCGTCAACCGCGGTAACCTCCGTGCCGCCGACTGGGACTCCGTCGCCGCCGCCCTGGCGGACTCGCCAGCCCCTTCCGATCCGCCTAAGTC CGCCGTGCAGTGCCGCCACAAGATCGAGAAGATACGGAAGCGGTACCGTGCCGAGAAGCAGCGCTGCGTGAATTTCCCAGGTCGGTTCTTCTCCTCTTGG GATCTGTTCCCCTTGTTGGATTCCATGGAGATCGGATCGATCGGATCCAAACAGGAGAAGGATGTCGATAAGTCGAATAATAATAATAATAACGATCATT ACGAGGGCTTGGAGGAGCCTGATTTGGATCTCGATCCGGATTTGGTTTTTAGGGCGAGGAAGTTTGGTAAAGTATCTGGTGGATTTAACGAGCGTGTTGT TGATTATGGGAACAAATATGATCAGAATTCAGTGTCTGTAGCGTTTATGCCCAATGACTATGGAAGATTCGATAGGAAAATTGGGGGTAACAACAGTAAC CTAGGGTTTGATAGTGACTATGGAAGTGGTGGATTCTCTAGGAAGATGGGGCAATTGCAGAGAGATGATATGATGAACGGTGTTAATGAAGAAAGAGACC GGTTTGGGAAGAAAGTGGTCGAGGAATGGGGGTATGGCTCATCGAGGATTCGAGTGAAGAACCACATCCAAGCTGATCGAAATGGGTTTGGGAGTGGTAA CACGAATGGTGTTGATGGTGGAGGAGTTAGTAGCAAGGGTAAAGATCCAGTTGCAGAAGTTGTGTCGGCGATTAAGATGCTGAGGGAAGGGTTTGTGATG GTGGAAGAGATGAAGATGGACATGGCAATGGAAATTGAGAAGATGAGAATGGGGATGGAGTTGAAGCATAACCAGATGCTGATCGAGATGCAGCAGGACA TTGTTGATGCAATTGCAAAGGCTCATGCGAATAAGAAAACGAACAATATAAAGAAGAAGAAGAGGAAGATGGATGTATCGTCGTCCCCTAATTCGCACAG AAACAACGGGGAGTCTGAAATCGCAGCAACAGAGTTCGAAACCATTGACTGA
AA sequence Show only first row Show all	>Lus10000963 pacid=23148138 polypeptide=Lus10000963 locus=Lus10000963.g ID=Lus10000963.BGIv1.0 annot-version=v1.0 MSSAVAADPSSRKVPPPCWTREETVELIKAYRDKWFAVNRGNLRAADWDSVAAALADSPAPSDPPKSAVQCRHKIEKIRKRYRAEKQRCVNFPGRFFSSW DLFPLLDSMEIGSIGSKQEKDVDKSNNNNNNDHYEGLEEPDLDLDPDLVFRARKFGKVSGGFNERVVDYGNKYDQNSVSVAFMPNDYGRFDRKIGGNNSN LGFDSDYGSGGFSRKMGQLQRDDMMNGVNEERDRFGKKVVEEWGYGSSRIRVKNHIQADRNGFGSGNTNGVDGGGVSSKGKDPVAEVVSAIKMLREGFVM VEEMKMDMAMEIEKMRMGMELKHNQMLIEMQQDIVDAIAKAHANKKTNNIKKKKRKMDVSSSPNSHRNNGESEIAATEFETID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	0	1
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	2.8	0.8614
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001711 [exp]	3.7	0.8301
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	5.9	0.8634
AT1G18010			Major facilitator superfamily ...		Lus10043371 [exp]	6.0	0.8541
AT5G64667		IDL2	inflorescence deficient in abs...		Lus10005811 [exp]	8.0	0.8286
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	8.1	0.8577
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	8.1	0.8181
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	9.5	0.8490
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	9.5	0.8366
AT5G47830			unknown protein		Lus10018732 [exp]	9.8	0.8170

Compare expression of checked genes

Lus10000963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.