Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020919 [exp] 66 / 4e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000964 pacid=23148134 polypeptide=Lus10000964 locus=Lus10000964.g ID=Lus10000964.BGIv1.0 annot-version=v1.0 ATGTACCGTCCATGGATCACATCATTTCGGCTGCAGGAGAAGAAGTTGGACGGAGTGGACATTGAGATTGAACAGCTTAGGAAGGGCACAGAGAAGAAGA AGCTGAAGGTCGATGGAGGTTGTTTTTTCAGCGAGTTGTGTACAATTCTCCCACTAGATGCAACCACTCTGATCGGGGTTGATGAGTCGATTAGAATGCA AGGTCCAACTAAGGAACTAGTAGGTGAATTTGTAAGAGCGAGGGATGCTGTGTGCACGTATTTGTTGACAGTGGATGAACATCTCATCGCTGGGATAAAT ATGCTGAAAGGTTCTGGTAACCCCAATTCCCAGGCTATTGTCAATTATTTGATTCCAGCACTCCGTTCGGATAAGGATGGGGATCAGCAGCTGGCATCCC AGGTGCAGCAACTGAACGTGCAATGA
AA sequence Show only first row Show all	>Lus10000964 pacid=23148134 polypeptide=Lus10000964 locus=Lus10000964.g ID=Lus10000964.BGIv1.0 annot-version=v1.0 MYRPWITSFRLQEKKLDGVDIEIEQLRKGTEKKKLKVDGGCFFSELCTILPLDATTLIGVDESIRMQGPTKELVGEFVRARDAVCTYLLTVDEHLIAGIN MLKGSGNPNSQAIVNYLIPALRSDKDGDQQLASQVQQLNVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000964 [exp]	0	1
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024933 [exp]	13.9	0.7253
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004602 [exp]	28.0	0.6263
AT3G46450			SEC14 cytosolic factor family ...		Lus10016575 [exp]	31.7	0.5973
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005632 [exp]	42.0	0.7090
AT3G04950			unknown protein		Lus10022395 [exp]	65.5	0.5897
					Lus10040164 [exp]	73.1	0.6454
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016227 [exp]	75.8	0.6828
AT2G06090			Plant self-incompatibility pro...		Lus10023196 [exp]	78.3	0.5981
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036714 [exp]	85.1	0.6512
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10036175 [exp]	88.1	0.6633

Compare expression of checked genes

Lus10000964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.