Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06050 573 / 0 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G76690 388 / 1e-133 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G76680 384 / 3e-132 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G09400 347 / 2e-118 FMN-linked oxidoreductases superfamily protein (.1) AT1G18020 291 / 3e-97 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 291 / 3e-97 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028663 [exp] 768 / 0 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10013218 [exp] 385 / 9e-133 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001276 [exp] 382 / 2e-131 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 369 / 2e-123 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 355 / 2e-120 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10001274 [exp] 344 / 6e-117 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10030737 [exp] 192 / 2e-58 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142800 [exp] 608 / 0 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 592 / 0 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 546 / 0 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.013G103000 [exp] 398 / 5e-138 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102700 [exp] 395 / 9e-137 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 394 / 1e-136 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 393 / 5e-136 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 390 / 5e-135 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004200 [exp] 381 / 4e-131 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.003G004600 [exp] 380 / 4e-131 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00724 [flax] [poplar] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Lus10000966 pacid=23145881 polypeptide=Lus10000966 locus=Lus10000966.g ID=Lus10000966.BGIv1.0 annot-version=v1.0 ATGGCAGAAGCTGAAGCAGCAGCCGGATCCGGATCATCAGCCACTCTGTTCTCTCCGTACAAGATGGGCAAGTTCAGTCTATCCCACAGGATTGTGCTGG CGCCGATGACGAGGTGCAGGGCGGCGGAGGGAGGTACTCCGACGGCGATGATGGCTGATTACTACGCTCAGAGATCGACTCCCGGCGGATTGCTCATCTC CGAAGGCACCAGCGTCCATCCTACTGCCCCTGGGTTTCCTCGCGTGCCGGGGATTTACACTGAAGAGCAAGTGGAAGCATGGAGGAAAGTAGTGGACGCA GTTCATGCCAAAGGAAGCATCATCTTCTGCCAGCTCTGGCACGTTGGCCGTGCTTCCCATCAAGTTTATCAACCAGGTGGAGCTGCACCGATCTCATCAA CCACCAAGCCCGTGTCGAAAAGGGGTCGAATCCTTATGCCAGATGGCAGCTGGGCTCCTTACCCGACTCCACGACAGTTAGAGACCTCCGAGATACCTGG TGTGGTCGAGATGTACCGCCACTCTGCAGTCAATGCCATTAGAGCAGGGTTTGACGGCGTTGAGATCCATAGTGCACACGGCTACCTAATCGACCAGTTC CTCAAGGACGGGATCAACGAAAGAAGCGACCAGTACGGTGGGTCCATCGACAACAGATGCCGGTTCCTTATGGAAATCGTCCAGGCAGTGGTCTCCGCAG TCGGTGCACCTAGACTCGGGGTCAGGATGTCACCGGCGATCGACCACCTAGACGCCATCGACTCAGACCCGCTCAAGCTAGGCCTGGCCGTGGTGGAGAG GCTCAACAAGCTACAATGCCAAGGTGGAGGTACGAATAAGCTCGCGTACCTCCACGTGACCCAGCCTCGCTACACGGCCTACGGACAAACCGAGTCTGGC AGGCCGGGGAGCGAGGAGGAAGAGGCCGCCTTGATGAGGACCCTGAGGGATGCTTACGACGGGACATTCATGGCTAGTGGCGCTTACACCAGAGAGCTAG GGCTCGAAGCCGTGGCTCGAGGGGATGCCGATTTGGTCTCCTATGGTAGGCTGTTTGTGTCCAATCCGGACTTGGTGTTGAGGTTTAAGGTTGATGCACC TTTGAATAGGTACACTAGGAAGACTTTCTATACCCATGATTTTGTTGGATATACCGACTATCCTTTCATGGAGAAAGCTAAACTTTAA
AA sequence Show only first row Show all	>Lus10000966 pacid=23145881 polypeptide=Lus10000966 locus=Lus10000966.g ID=Lus10000966.BGIv1.0 annot-version=v1.0 MAEAEAAAGSGSSATLFSPYKMGKFSLSHRIVLAPMTRCRAAEGGTPTAMMADYYAQRSTPGGLLISEGTSVHPTAPGFPRVPGIYTEEQVEAWRKVVDA VHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTTKPVSKRGRILMPDGSWAPYPTPRQLETSEIPGVVEMYRHSAVNAIRAGFDGVEIHSAHGYLIDQF LKDGINERSDQYGGSIDNRCRFLMEIVQAVVSAVGAPRLGVRMSPAIDHLDAIDSDPLKLGLAVVERLNKLQCQGGGTNKLAYLHVTQPRYTAYGQTESG RPGSEEEEAALMRTLRDAYDGTFMASGAYTRELGLEAVARGDADLVSYGRLFVSNPDLVLRFKVDAPLNRYTRKTFYTHDFVGYTDYPFMEKAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	0	1
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	2.0	0.8681
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	3.5	0.8451
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	4.9	0.8571
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	5.0	0.8392
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	7.4	0.8166
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	7.6	0.8586
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	9.8	0.8145
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	12.0	0.8288
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	12.6	0.8187
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	13.0	0.8305

Compare expression of checked genes

Lus10000966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.