Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77280 791 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 676 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 630 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 378 / 7e-122 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 363 / 2e-118 Protein kinase superfamily protein (.1.2.3) AT5G65530 279 / 5e-86 Protein kinase superfamily protein (.1) AT5G18910 269 / 2e-81 Protein kinase superfamily protein (.1) AT5G35960 265 / 7e-81 Protein kinase family protein (.1) AT2G18890 261 / 5e-80 Protein kinase superfamily protein (.1.2) AT5G37790 265 / 1e-79 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028661 [exp] 1378 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 628 / 0 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 485 / 2e-162 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 450 / 5e-149 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 449 / 3e-148 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 315 / 5e-99 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 317 / 1e-98 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10035949 [exp] 273 / 5e-83 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10019990 [exp] 271 / 7e-81 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182800 [exp] 925 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 874 / 0 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 752 / 0 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 723 / 0 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 421 / 1e-137 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 402 / 2e-130 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 384 / 2e-121 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.006G173700 [exp] 286 / 8e-87 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 284 / 3e-86 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.013G028100 [exp] 280 / 9e-86 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000968 pacid=23145879 polypeptide=Lus10000968 locus=Lus10000968.g ID=Lus10000968.BGIv1.0 annot-version=v1.0 ATGGTGGCCAGCTCCGGCGACGCCGTCGGCGGCGTCGGAGGAAGGAAAGTGCTCGTCGGAGTGAAGATGGACTCGTCAAGCAGGGAGCTACTCACTTGGG CGCTCGTCAAAGTGGCTGAACCCGGTGATGTAGTTATTGCAGTCCATGTGCTCGGAAATAATCAAATTGTGGATCGAGATGGGAAATCATCGCTTCTGTC ACTTGTGAGGGCCTTTGACTCTGTTCTCGCCGTCTATGAAGGCTTCTGCAACTTGAAGCAGGTGGATCTGAAGCTGAAGATTTGTAGGGGTTCATCGATA AGGAAGATACTAGTACGGGAAGCGAACGCTTACTCGGCAAAGAAGCTGATACTTGGAGCTGTTAATTCCCCTAATTATACAGTGGTGGTGAAGTCGCCAA CCTCTGTGGCGAAGTACTGTGCCAAAAAGCTTGGGGAGACTTGTTCTGTGATCGCTGTTCATAATGCGAAGGTTGTGTTTCAAAGGCATCCTTCTCCTCC ACCACTTGATTCAACTTCCCAAGGAGGAGATGACAGTGGGATCAGCTGCAGGCTGCGCCGTGGTCTGCTTAACAAGATACAAAGGTCGATTTCATTGCAC AAGAGCTCGAAAATCGTGAGTGAAGATGGTGGTGGTGTCAATGGGCAGACTTTACAAGAGGCCTTGATGAATGCACGTTCTTCTTCTAACAGCTTGGAGA GTGTCATGAAAGACCGCTGCTCGATTTGTAAGACACAGACTCAATCGAGACCTTCCGATTGTAAGGAGCCACCGAGGAGACGTGGAAGTGACGACTCGTT GGCTCTAGTGCCTGTGCCGAAGGCAGAGGCAGCTTCAAGCTCGATTACCATGTTGGTCAAGCAATTGCCTGAGTCGAAGCCCGGATGGCCACTACTCAGC CGTGTGGCTTCACGAGATATGAAGCCTGGGGTTCGACCTACGATGAGAAAGATCTCCGTGGTTCAGTGGGCATTGAGGCTTCCATCTAGGCAGCTTCAGT TGTCTATTACCAATGGGGAGGAATGTTACAAGTCTTGTTTGGATGAACAAACCGGTGCAATCGTTCCGGTTGGTTTCGAGAACGTGGCGAGCTTACATTC TCCTGAGTATATCTTAAACTCTTTACCAAAAGAGTTGGAAGATCTTCACGAGAAGTACTCTGCAACTTGCAGATTGTTTAAGTTACAAGAACTTGCCTCA GCCACATCAAGTTTCTTACCAGAGAACTTGATTGGGAGAGGAGGAAGTAGTCAGGTGTACAAAGGATGCCTCCCTGATGGCCAAGAGCTCGCGGTGAAAA TCTTGAAGCCGTCAGAAGATGTGATCAAGGAGTTTGTTCTGGAAATCGAAATCATCACAGCTTTACATCACAAGAACATCATTTCTCTCCTCGGGTTCTG TTTCGAGGACAACAAGCATCTTCTCTTAGTTTATGACTTGCTCTCCAGGGGAAGCCTTGAAGAGAATCTTCATGGTAACCGAAAAGACACTGCGTTCGGT TGGAGTGAGAGATATAGGGTGGCTGTAGGAGTTGCTGAGGCCTTAGATTATCTCCACAATACCAGTGATCATCCTGTGATCCATAGGGATGTTAAATCCT CTAACATATTGTTGTCTGAAGATTTTGAGCCTCAGCTCTCTGATTTTGGACTTGCTAAATGGGCATCAACATCTTCTTCTCACATAGTTTGCACTGATGT TGCTGGAACATTCGGTTACTTGGCTCCGGAATACTTCATGTATGGCAAAGTAAATGATAAGATTGATGTGTACGCATTCGGTGTCGTGCTCCTAGAACTT ATTTCCGGAAGAAAGCCTATCAGCAATGATCTTCCGAAGGGTCAAGAGAGCGTGGTGATGTGGGCCAAACCAATCCTTCACAGTGGCAAGATTTCTCAGT TACTAGATTCAAGCTTGGGTGGTGACTATGATAATGAGGAGATTCAGAGGATGGTATTGGCTGCAACTCTCTGCATACGGCGTGCCCCTCGAGCTAGGCC TCCAATGAGCACTGTCTTGAAGCTGTTGAAAGGAGACGCTGAGGTAACGAAATGGGCGAAACAAGAAGTCAACGTTGCTGCAGAAGACTCGGACTCGCTC GACGAGGGAGCGAGTCCACGCTCCGACATCAAGTCCCACCTTAACCTCGCGATGCTCGACGTGGAAGATGACTCCCTTTCGTCAAGTAGCATCGAGCAGA ACTTGTCGCTCGAGGAGTACCTCCAAGACAGGTGGAGCCGCTTGTCGAGCTTTGACTAA
AA sequence Show only first row Show all	>Lus10000968 pacid=23145879 polypeptide=Lus10000968 locus=Lus10000968.g ID=Lus10000968.BGIv1.0 annot-version=v1.0 MVASSGDAVGGVGGRKVLVGVKMDSSSRELLTWALVKVAEPGDVVIAVHVLGNNQIVDRDGKSSLLSLVRAFDSVLAVYEGFCNLKQVDLKLKICRGSSI RKILVREANAYSAKKLILGAVNSPNYTVVVKSPTSVAKYCAKKLGETCSVIAVHNAKVVFQRHPSPPPLDSTSQGGDDSGISCRLRRGLLNKIQRSISLH KSSKIVSEDGGGVNGQTLQEALMNARSSSNSLESVMKDRCSICKTQTQSRPSDCKEPPRRRGSDDSLALVPVPKAEAASSSITMLVKQLPESKPGWPLLS RVASRDMKPGVRPTMRKISVVQWALRLPSRQLQLSITNGEECYKSCLDEQTGAIVPVGFENVASLHSPEYILNSLPKELEDLHEKYSATCRLFKLQELAS ATSSFLPENLIGRGGSSQVYKGCLPDGQELAVKILKPSEDVIKEFVLEIEIITALHHKNIISLLGFCFEDNKHLLLVYDLLSRGSLEENLHGNRKDTAFG WSERYRVAVGVAEALDYLHNTSDHPVIHRDVKSSNILLSEDFEPQLSDFGLAKWASTSSSHIVCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLEL ISGRKPISNDLPKGQESVVMWAKPILHSGKISQLLDSSLGGDYDNEEIQRMVLAATLCIRRAPRARPPMSTVLKLLKGDAEVTKWAKQEVNVAAEDSDSL DEGASPRSDIKSHLNLAMLDVEDDSLSSSSIEQNLSLEEYLQDRWSRLSSFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77280			Protein kinase protein with ad...		Lus10000968 [exp]	0	1
AT1G27210			ARM repeat superfamily protein...		Lus10010730 [exp]	3.3	0.8510
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	13.7	0.8488
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10015363 [exp]	14.5	0.7560
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	14.9	0.8415
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	15.9	0.8230
AT1G24560			unknown protein		Lus10025844 [exp]	18.3	0.7373
AT1G47330			CBS domain-containing protein ...		Lus10032715 [exp]	22.0	0.8364
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	23.1	0.8130
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10027369 [exp]	26.1	0.8041
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	26.3	0.8299

Compare expression of checked genes

Lus10000968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.