Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09760 306 / 1e-104 U2A' U2 small nuclear ribonucleoprotein A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028659 [exp] 444 / 9e-159 AT1G09760 365 / 1e-128 U2 small nuclear ribonucleoprotein A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158800 [exp] 346 / 7e-120 AT1G09760 283 / 3e-96 U2 small nuclear ribonucleoprotein A (.1) Potri.001G072100 [exp] 345 / 2e-119 AT1G09760 328 / 4e-114 U2 small nuclear ribonucleoprotein A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000970 pacid=23145884 polypeptide=Lus10000970 locus=Lus10000970.g ID=Lus10000970.BGIv1.0 annot-version=v1.0 ATGGTGAGGCTCACGGCCGACTTGATCTGGAACAGCCCTCACTTCTTCAACGCCATCAAGGACCGCGAATTGGACCTCCGAGGTAACAAGATCCCTGTGA TTGAAAACTTGGGCGCTACTGAGGATCAATTCGATACGATTGACTTGTCAGATAATGAGATCGTCAAGCTGGAAAATCTCCCGTTTCTTAATCGATTGGG CACGTTGATAATGAACAACAACAGGATTACTCGAATCAGCCCCATAATTGGAGAGTTCTTGCCGAAATTGCACTCGTTAGTCCTGACAAACAACAGACTT GTCAATTTGGTGGAGATCGATCCACTTGTGTCTCTTCCGAAGCTGCAGTACCTCAGTCTTCTGGATAACAACATCACTAAGCGGCCGAATTACAGGCTGT ATGTAATTTTCAAGCTGAAGGCTCTTCGGGTGCTTGACTTTAAGAAAGTGAAAGCAAAGGAGAGAGCTGAGGCGGAGAACTTGTTTGCTTCCAAGGAAGT AGAAGAGGAAGCTAAGAAGGAAGTTGCTAAGACACCTGCTCCTATTGAGGTTCAAAACGATGCTGCAGAGGAACAACAGAGTGCCAAGGTTGTGGGACCG ACTCCCGAACAAATTTTGGCAATCAAGGCTGCCATTGTGAATTCTCAGACCCTTGAAGAGGTCGCAAGACTCGAGAAGGCATTGAGCACGGGCCAGATTC CCGCCGACTTGCACATGCTGGACGATGTCCACCAGCCCAACAGCTCGAAAGACAACGCTGACGAAATGGAAACCGATAATCTCCCCAAGACCAACAGCGA ACCTACCGCCATGGATCAAGTTCGTTGGGTCGAGATGCAGTCTTTACCCTTGAAACTCCACAAAAGCCTAGGATTTTGGCATCAACATTCATCTATTCGC GGATCACTATTTGGCGTTTTCGAGTCAAGAATACAAACCGCATTTTCGTAA
AA sequence Show only first row Show all	>Lus10000970 pacid=23145884 polypeptide=Lus10000970 locus=Lus10000970.g ID=Lus10000970.BGIv1.0 annot-version=v1.0 MVRLTADLIWNSPHFFNAIKDRELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENLPFLNRLGTLIMNNNRITRISPIIGEFLPKLHSLVLTNNRL VNLVEIDPLVSLPKLQYLSLLDNNITKRPNYRLYVIFKLKALRVLDFKKVKAKERAEAENLFASKEVEEEAKKEVAKTPAPIEVQNDAAEEQQSAKVVGP TPEQILAIKAAIVNSQTLEEVARLEKALSTGQIPADLHMLDDVHQPNSSKDNADEMETDNLPKTNSEPTAMDQVRWVEMQSLPLKLHKSLGFWHQHSSIR GSLFGVFESRIQTAFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	0	1
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	1.7	0.8885
AT5G57120			unknown protein		Lus10001627 [exp]	5.0	0.8641
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	8.2	0.8375
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	8.9	0.7893
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	10.1	0.8655
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	11.5	0.8161
AT2G25970			KH domain-containing protein (...		Lus10020998 [exp]	11.8	0.8405
AT4G12540			unknown protein		Lus10038281 [exp]	13.4	0.8563
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	15.1	0.8578
AT1G07970			unknown protein		Lus10023345 [exp]	15.4	0.8725

Compare expression of checked genes

Lus10000970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.