Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52560 1004 / 0 ATUSP UDP-sugar pyrophosphorylase (.1) AT1G31070 71 / 8e-13 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) AT2G35020 71 / 9e-13 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) AT3G56040 43 / 0.0006 UGP3 UDP-glucose pyrophosphorylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028658 [exp] 1239 / 0 AT5G52560 1030 / 0.0 UDP-sugar pyrophosphorylase (.1) Lus10036227 [exp] 73 / 3e-13 AT1G31070 844 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10038366 [exp] 72 / 4e-13 AT1G31070 846 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10017443 [exp] 50 / 4e-06 AT3G56040 1100 / 0.0 UDP-glucose pyrophosphorylase 3 (.1) Lus10007512 [exp] 49 / 1e-05 AT3G56040 1101 / 0.0 UDP-glucose pyrophosphorylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077400 [exp] 1070 / 0 AT5G52560 1040 / 0.0 UDP-sugar pyrophosphorylase (.1) Potri.003G074700 [exp] 69 / 3e-12 AT2G35020 825 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.001G159700 [exp] 63 / 3e-10 AT2G35020 779 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.005G183200 [exp] 44 / 1e-05 AT5G52560 45 / 5e-07 UDP-sugar pyrophosphorylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000971 pacid=23145878 polypeptide=Lus10000971 locus=Lus10000971.g ID=Lus10000971.BGIv1.0 annot-version=v1.0 ATGGAATCCGCAACGGAAGCAGTTTCCAAGCTCCACATCAATGGCGATTTCTCATCCTCCGTCCCCAATCTCCACCGCAACATCACTCTCCTCTCCCCTG ACCAGATCGAACTGGCAAAGATGCTGGTGGAGATGGGACAGAGTCACTTGTTCAGCGACTGGCCGGAGCCTGGAGTTGGAGACGACGAGAAGATAGCGTT CTTCGATCAGGTTGCTCGACTGCATTCAAGCTATCCTGGTGGATTAGCATCTTATATTAGAACTGCCAGACAGCTGTTAGCCGACTCAAAAGCTGGCAAG AACCCTTTTGATGGTTTTACACCTTCGGTTCCGACAGGAGAGAACCTGAGATACGGTGATGAAACCTTCATGAAATTTGAAGAAGTGGGTGTAAAGGAAG CCCAGAATGCAGCGTTTGTTCTTGTTGCTGGTGGACTCGGGGAGCGTCTTGGTTACAATGGAATTAAGTTAAATATCTTCTGCTCTCAGACTACAACAGG AACTTGCTTCTTACGGCACTACATTGAGAACGTTTTGGCTCTTCAGGAAGCTAGCTGTAAAATGACTGGAGGTCAATCCGAAAGGGATATTCCTTTTGCA ATCATGACGTCAGATGACACACATGCACGTACGCTGCAGCTTCTTGAATCCAATTCATATTTTGGGATGAAACCGGCTCAAATAAAGCTTTTGAAACAGG AGAAAGTTGCATGCTTAGAAGATAATGATGCAAGGCTTGCATTGGATCCCCAGAATAAATACAGAATTCAGACAAAACCTCATGGTCATGGTGATGTGCA TGCACTTCTCTACTCTAGTGGGACTCTTCAAGAATGGCAAAAGGGTGGTGTTCGGTGGGTTCTATTCTTCCAAGATACAAATGGACTTCTATTTAAGGCA ATTCCAGCTTCATTAGGAGTCAGTGCCAGTAAAGGGTATCACGTTAACTCTCTTGCTGTTCCCCGGAAAGCTAAAGAAGCTATTGGAGGAATCACCAAGC TTACTCATACGGATGGAAGGTCCATGGTGATCAATGTGGAATACAATCAGCTTGATCCCCTACTGAGAGCAACCGGGTTCCCTGATGGAGATGTCAACTG CGAGACTGGCTATTCCCCTTTTCCAGGAAACATTAATCAATTGATCGTGGAAGTTGGACCATACCTTGAGGAGCTGAAGAAAACAGGAGGTGCTATAAAG GAGTTCGTGAATCCAAAATATAAAGATACTACTAAAACCGCATTTAAATCATCCACTCGTCTGGAGTGCATGATGCAGGACTATCCAAAGACATTGCCTC CATCGGCAAGGGTTGGATTTACGGTAATGGATGCATGGGTTGCTTATGCCCCAGTGAAGAACAACCCTGAGGATGCTGCTAAGGTACCCAAAGGGAATCC GTACCATAGTGCAACTTCTGGAGAAATGTTCATCTACAGAGCAAACTGCCTCATTCTCAAGAAGGCTGGTGTCCAAGTGGAAGATCCGGTGAAGCAGGAA TTCAACGGGCAAGAGGTGGAAGTATGGCCCCGCGTCGTCTGGAAGCCAAAGTGGGGACTGACATTCTCAGACATAAAGAAGAAAGTTGCTGGAACCTCCT CCATTTCTCTAAACTCTACCTTAGCTCTTAAAGGCCGTAGCATACTCATTGAAGATCTCTCGTTAGACGGTGCTCTCCTAATCGAATCACACGATGAAGC TGAGGTTAAAGTAACGGGTACAGTTAAGAACAAGGGTTGGGCCATCGAGAAAGTCGATTACAAAGACACTTCAGTAGCTGAGGAAATCAGAATCAGAGGG TTCAAATTCCAGAAAGAAGAACAGCTCGAAAAACACTACGCCGAGCCCGGCAAATTCGAGCTGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10000971 pacid=23145878 polypeptide=Lus10000971 locus=Lus10000971.g ID=Lus10000971.BGIv1.0 annot-version=v1.0 MESATEAVSKLHINGDFSSSVPNLHRNITLLSPDQIELAKMLVEMGQSHLFSDWPEPGVGDDEKIAFFDQVARLHSSYPGGLASYIRTARQLLADSKAGK NPFDGFTPSVPTGENLRYGDETFMKFEEVGVKEAQNAAFVLVAGGLGERLGYNGIKLNIFCSQTTTGTCFLRHYIENVLALQEASCKMTGGQSERDIPFA IMTSDDTHARTLQLLESNSYFGMKPAQIKLLKQEKVACLEDNDARLALDPQNKYRIQTKPHGHGDVHALLYSSGTLQEWQKGGVRWVLFFQDTNGLLFKA IPASLGVSASKGYHVNSLAVPRKAKEAIGGITKLTHTDGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLIVEVGPYLEELKKTGGAIK EFVNPKYKDTTKTAFKSSTRLECMMQDYPKTLPPSARVGFTVMDAWVAYAPVKNNPEDAAKVPKGNPYHSATSGEMFIYRANCLILKKAGVQVEDPVKQE FNGQEVEVWPRVVWKPKWGLTFSDIKKKVAGTSSISLNSTLALKGRSILIEDLSLDGALLIESHDEAEVKVTGTVKNKGWAIEKVDYKDTSVAEEIRIRG FKFQKEEQLEKHYAEPGKFELKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	0	1
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	1.4	0.8098
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	3.2	0.7752
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	3.5	0.7781
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	4.6	0.7945
AT1G13570			F-box/RNI-like superfamily pro...		Lus10019144 [exp]	7.2	0.6942
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	7.5	0.8025
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10011044 [exp]	8.0	0.7589
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10010365 [exp]	8.2	0.7306
AT1G27200			Domain of unknown function (DU...		Lus10010731 [exp]	12.5	0.7391
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	13.4	0.7406

Compare expression of checked genes

Lus10000971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.