Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21550 126 / 1e-37 Calcium-binding EF-hand family protein (.1) AT4G20780 100 / 8e-27 CML42 calmodulin like 42 (.1) AT5G44460 98 / 6e-26 CML43 calmodulin like 43 (.1) AT5G37770 94 / 2e-24 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G66400 90 / 4e-23 CML23 calmodulin like 23 (.1) AT1G73630 82 / 4e-20 EF hand calcium-binding protein family (.1) AT1G05990 82 / 4e-20 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT5G42380 81 / 1e-19 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT1G24620 81 / 2e-19 EF hand calcium-binding protein family (.1) AT4G12860 80 / 2e-19 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028657 [exp] 286 / 5e-100 AT1G21550 122 / 9e-36 Calcium-binding EF-hand family protein (.1) Lus10042761 [exp] 122 / 5e-36 AT1G21550 70 / 7e-16 Calcium-binding EF-hand family protein (.1) Lus10029730 [exp] 102 / 9e-29 AT1G21550 68 / 8e-16 Calcium-binding EF-hand family protein (.1) Lus10021134 [exp] 100 / 1e-26 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10042762 [exp] 105 / 2e-26 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017174 [exp] 98 / 8e-26 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10003239 [exp] 95 / 1e-24 AT4G20780 249 / 5e-85 calmodulin like 42 (.1) Lus10019863 [exp] 91 / 4e-23 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10014050 [exp] 91 / 5e-23 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183300 [exp] 169 / 2e-54 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.002G077300 [exp] 164 / 4e-52 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 94 / 3e-24 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 92 / 2e-23 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.006G112500 [exp] 91 / 4e-23 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.004G089400 [exp] 89 / 6e-23 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.016G142000 [exp] 89 / 4e-22 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.015G039500 [exp] 87 / 9e-22 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.010G107100 [exp] 87 / 2e-21 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 86 / 2e-21 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10000972 pacid=23145886 polypeptide=Lus10000972 locus=Lus10000972.g ID=Lus10000972.BGIv1.0 annot-version=v1.0 ATGCCCCCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCACCGCAGTCGCCGTCGGTCTACAATCCGACGATCTCCGGCGGATATTCCACCAGCTGG ACAAAAACGGCGATGGGTTTCTATCGATCGACGAGCTGAGCTGGCTCCTCGATCGAATCGGAGGAGGGTCGTCTTCAGTTGTTCAGTTCACGGTGGCGGA GCTGGAGTCGTCGATCGGGAAGTCGAGCCTGGACTTCGAGGAGTTTATCGAGTTCTACGAGTCGATAGCGGGGGGAAAGTCGGAATCTTTCGACGCGGTG GAGAAGGATTTGGAGGAGGCGTTCAGAGTGTTCGATTTAAACGGCGACGGATTCATAACGAGCGAGGAGCTCCAGAAGGTGCTGGAGAGGCTGGGGCTGT GGGACGAGGCGAAGGACTGTCGGAGTATGATCTGCGTTTACGACACGAATCGCGACGGAGTTCTCGATTTCGACGAGTTCAAGAGGATGATGATGGTGAA TCGGAGGGGCTGA
AA sequence Show only first row Show all	>Lus10000972 pacid=23145886 polypeptide=Lus10000972 locus=Lus10000972.g ID=Lus10000972.BGIv1.0 annot-version=v1.0 MPPSSSSSSSAAASTAVAVGLQSDDLRRIFHQLDKNGDGFLSIDELSWLLDRIGGGSSSVVQFTVAELESSIGKSSLDFEEFIEFYESIAGGKSESFDAV EKDLEEAFRVFDLNGDGFITSEELQKVLERLGLWDEAKDCRSMICVYDTNRDGVLDFDEFKRMMMVNRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21550			Calcium-binding EF-hand family...		Lus10000972 [exp]	0	1
AT4G15760		MO1	monooxygenase 1 (.1.2)		Lus10028081 [exp]	3.0	0.9335
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	7.3	0.9335
AT5G02090			unknown protein		Lus10010878 [exp]	11.9	0.9334
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029452 [exp]	16.0	0.9176
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	17.7	0.9280
AT3G57450			unknown protein		Lus10029496 [exp]	19.0	0.9230
AT3G56360			unknown protein		Lus10029031 [exp]	19.4	0.8377
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	19.7	0.9321
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	20.3	0.9262
AT1G65440		GTB1	global transcription factor gr...		Lus10029085 [exp]	20.8	0.8309

Compare expression of checked genes

Lus10000972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.