Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77260 577 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 549 / 0 Putative methyltransferase family protein (.1) AT2G39750 538 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23300 326 / 6e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 325 / 9e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 320 / 4e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 311 / 5e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 308 / 9e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G04430 304 / 9e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 309 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028656 [exp] 913 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028655 [exp] 897 / 0 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10042762 [exp] 676 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 672 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 535 / 3e-178 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 531 / 4e-176 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 528 / 3e-175 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 525 / 8e-174 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029733 [exp] 496 / 9e-164 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077100 [exp] 602 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 545 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 514 / 8e-170 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G183700 [exp] 374 / 5e-117 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G076900 [exp] 364 / 2e-113 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.005G184500 [exp] 311 / 1e-91 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 311 / 2e-91 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 299 / 6e-89 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 306 / 2e-88 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036800 [exp] 296 / 3e-88 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000973 pacid=23145883 polypeptide=Lus10000973 locus=Lus10000973.g ID=Lus10000973.BGIv1.0 annot-version=v1.0 ATGAAGCTATCCGCCGCCACCGCCGTGGTCGACATAGCCAAAACCCCAAACCTCGTCAAGCTCGCCGCCATCGCCCTCCTCTCCCTCTCCGTCGCCCTCC TCTTCTACCACCACCACCCTTCCTTCCCTTCCTCCGCCTTCTCCTCATTGCCCTTCATCACCACCGCCAACTCCTCTGCCGAAGTCAATCCCAGTTCGAT TGTAATCAAGCCGAAGAAGAAGAGGATTCTGCCTCCGTCGGTGGTGGTGATTACGGGGATAGTGGACGAGACCGGCGCGATGACCGACGACTTCGACGTC GGGGAGTTTGATTCCAGCGCGATGGAAGAGCTCAGGAGTTTCAGAGGAAGATCGGATGAGAAGGAGAAAGAGGAGGTAATTAAGAAGTACGAGAAGTTCA AGGCGTGTGATTATAACAAGATCGATCACATTCCTTGTTTGGAGAATTTCGAAAGGAATTGCCCCAATTCGACGATGAATTGCGTTCTTCCTTGGCCTAA AGGTTACAAGATATCACTCCCCTGGCCTAGAAGCCGCGAAGAGGTGTGGCTTCGTAATGTACCTGATACAAGTCTGGTTCAGGATCAAGAGTATGCAATG TCAGTGAAAGATGATAAGATCATATTTCGAGATGGTGTCAATGGTGTTGATAAGTATCTGGACTTGATTTCACAGATGGTTCCTGACATTGATTTCGGTT ATCGGACACAAGTAGCCTTAGACATTGGTTCTGGGATCGGGAGCCTTGCAGCGTCGTTGTTTCAGCGTAATGTGACGACTCTTTCGATTGGGACGAAGGA TGTTCATAGGAATCAGATTCAGTTCGCATTGGAGCGAGGCGTTCCAGCAATGGTGGCTGGATTCGGTACTCGGAGGCTGCCGTTTGCGAGCCAAGCTTTT GACTTGATTCATAGCTCGAGATCAGGAATTGATTGGACTGTTGATAATGGCGTTTTGCTTCTGGAGGTGGACAGAATGCTGAGAGCCGGGCGATATTTCG TGTGGGGAGTGCCACAAGTTGATAATCGTGATGTCAGTTTAGAGCATCAATGGAAAGAAATGGAAGATCTTACTGGGCACCTCTGCTGGAAACTTGTGAA GAGGGAAGGTAACATTGCCATATGGCGTAAACCCCTGAACTCGAGCTGCTATCTTGGTCGTGGCAATGGAACAAAACCACTACTATGTAGTTCCAATGAT GATCCGGATAATGTTTGGTATATGAATATGACAGCATGCATAACTCCGTTGCCAGAGGATGGATTCGGATCAAATGTTACTATGTGGCCAGCGCGACTTC ACTATCCTCCTGATCGTCTCCAGAGTATTAAAATGGATTCATCCATATCCAGAAAGGAACTTCTGAAAGCAGAATCAAGATACTGGAATGAAATTATAGG CAGTTACGTTAGAGCTTTCCACTGGAAAGAGAAGAACTTTCGGAATGTCATAGACATGAGGGCCGGTTTTGGAGGGTTTGCAGCAGCAATGCATGACTTA GAACTTGCCTCCTGGGTCTTGAATGTTGTTCCTGTCAACGGCTTCAACACCCTGCCGGTCATATACGACCGTGGACTCCTTGGAGTAATGCATGACGGCT TGCTACCTTGCTGCTGGATTGATTTCATTACCAACCAAGTCCTGACTTCTTCGATATCCAGGTGCGAGCCATTCGATACTTACCCCAGATCGTACGACCT CGTGCATGCATCAGGTCTATTTTCTGACGAGAGGAAAAGGTCGGTCAGCGAAATCGGGATGGGCGGTGGTGACGATAGATCGACTGGTGGTCGGTTGGAT GTGGCTAATAGAGGGAAATACTGGAAGAGTGAGCCGGTGAATGGGTTCGTTAACGATGATCGTGATGGGAGATTGTCATCTAGGGAAGAGCTACACACTT ATAAGAGGAGGAAACGGACGGGATCTAGTTCAGAGAAGAAAGATCTTGGAGAAGGCAGTAGTTCTGGAGAAGCGGCTGGGAAACTAGCGCAGGAAGAGAC TATGAAAAAACCCCTTGACCATCCTGTCGGCAGCCAAACTGGTTTAACTGGTTCGAACGATGGTTCACAAGGGCAGTGGAGAAATTATATCCTGGAGCAA ATGTACCAGTCGTTAAGTGACGACAAAGGTGGTATACAGGATTTCATCAAAGATGTACTCGGACCATCATCGTTAAAGGCTTCTCACGAACGAAATCACC GTACTGTAACTGATACTTGCCAACTTGTGCTCCGTGGCATGATATCATCTGAGTTTTTCACCTCACTATGCAGGCTACTATATGAAAATTTCCATGAAAG CAGCACTGGTAACCTTTTCAGCCTAAGTGATATAAATAGAAGGATGATAAATGGAGATTATGAGCATCGACCCGGGTTTTTCTCTCAAGATGTCCAACAG TTCTGGAAAAAGTTTGAAGGGATTGGAACCGAACTGATTTTCCTCGCGAGGAGCCTATCCGATGAATCAACCAAGTCCTTCGAGAAACAGTTGTTAACAG CAGATCAAACGGAAGGCGCGTGCAGATACTGTCAGAAAAAAGCAGACAATGATAAAGATTGTCCAGTCTGCGATTTGTGCGAGGAAATGTACCATATCTC GTGCATCGATCCCCCCCTCGAAGAAATTCCTCCGGCAAGTTGGTATTGCTCCGGTTGTTTAGCCGATGATGGAATCTGCACTCACGAACAATGTGTCGTC TGCAAGAGGCTCGATAATAATAATCGAGCAGCTCACTCAGCTGTCAGCAAATCCAGCGAGGAAACATTGTCCGATTTACGTGAGCCACCGTGTCAGAGCA CCGATGCTTCCTCGATTCATTGCAAGCTTTGTGGAAGCGATTTCGAGAGTGGAGGAAAAGTGAAGATCTGTGAAAACTCCGAATGCCCTAACAAGTATTA CCACACGAGGTGTTTGACAGCGAAGCAACTCAGCTGGAACGGTGGTCCCGTGTGGTACTGCCCTTCGTGTCTCTGCCAAGGTTGCTTAGCCGATAAAGAC GACCACGATATCGTTCTGTGTGATGGTTGTGATGATGGTTACCACCTTTACTGCATGGAGCCGGCACGAACTTCTATACCAACGGGGAGATGGTTTTGTA GGCAGTGTATGGTGAGACTGAATAAAGTTCGAAGAGCTAGGGAGGCGTACGAGAAATCGGAGAGAAAAAACGAAGGGATAACTTTGTTGATCAATGCTTC TCTTATAGAAGACAAGTTTGCTGGGAAGCTGAAGAAGCAGAGTTGA
AA sequence Show only first row Show all	>Lus10000973 pacid=23145883 polypeptide=Lus10000973 locus=Lus10000973.g ID=Lus10000973.BGIv1.0 annot-version=v1.0 MKLSAATAVVDIAKTPNLVKLAAIALLSLSVALLFYHHHPSFPSSAFSSLPFITTANSSAEVNPSSIVIKPKKKRILPPSVVVITGIVDETGAMTDDFDV GEFDSSAMEELRSFRGRSDEKEKEEVIKKYEKFKACDYNKIDHIPCLENFERNCPNSTMNCVLPWPKGYKISLPWPRSREEVWLRNVPDTSLVQDQEYAM SVKDDKIIFRDGVNGVDKYLDLISQMVPDIDFGYRTQVALDIGSGIGSLAASLFQRNVTTLSIGTKDVHRNQIQFALERGVPAMVAGFGTRRLPFASQAF DLIHSSRSGIDWTVDNGVLLLEVDRMLRAGRYFVWGVPQVDNRDVSLEHQWKEMEDLTGHLCWKLVKREGNIAIWRKPLNSSCYLGRGNGTKPLLCSSND DPDNVWYMNMTACITPLPEDGFGSNVTMWPARLHYPPDRLQSIKMDSSISRKELLKAESRYWNEIIGSYVRAFHWKEKNFRNVIDMRAGFGGFAAAMHDL ELASWVLNVVPVNGFNTLPVIYDRGLLGVMHDGLLPCCWIDFITNQVLTSSISRCEPFDTYPRSYDLVHASGLFSDERKRSVSEIGMGGGDDRSTGGRLD VANRGKYWKSEPVNGFVNDDRDGRLSSREELHTYKRRKRTGSSSEKKDLGEGSSSGEAAGKLAQEETMKKPLDHPVGSQTGLTGSNDGSQGQWRNYILEQ MYQSLSDDKGGIQDFIKDVLGPSSLKASHERNHRTVTDTCQLVLRGMISSEFFTSLCRLLYENFHESSTGNLFSLSDINRRMINGDYEHRPGFFSQDVQQ FWKKFEGIGTELIFLARSLSDESTKSFEKQLLTADQTEGACRYCQKKADNDKDCPVCDLCEEMYHISCIDPPLEEIPPASWYCSGCLADDGICTHEQCVV CKRLDNNNRAAHSAVSKSSEETLSDLREPPCQSTDASSIHCKLCGSDFESGGKVKICENSECPNKYYHTRCLTAKQLSWNGGPVWYCPSCLCQGCLADKD DHDIVLCDGCDDGYHLYCMEPARTSIPTGRWFCRQCMVRLNKVRRAREAYEKSERKNEGITLLINASLIEDKFAGKLKKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	0	1
AT2G03830		RGF8	root meristem growth factor 8,...		Lus10036830 [exp]	5.1	0.9198
AT4G32060			calcium-binding EF hand family...		Lus10041027 [exp]	6.9	0.9020
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	6.9	0.9183
AT3G50610			unknown protein		Lus10009346 [exp]	7.9	0.8815
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	8.1	0.9074
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	22.6	0.8877
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	23.0	0.8994
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	23.9	0.8336
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	24.7	0.8939
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10006626 [exp]	25.7	0.8535

Compare expression of checked genes

Lus10000973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.