Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22590 66 / 7e-14 MADS AGL87 AGAMOUS-like 87 (.1.2) AT5G26650 63 / 5e-12 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 59 / 2e-10 MADS AGL90 AGAMOUS-like 90 (.1) AT2G28700 56 / 2e-09 MADS AGL46 AGAMOUS-like 46 (.1) AT5G48670 55 / 3e-09 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT3G05860 53 / 1e-08 MADS MADS-box transcription factor family protein (.1.2.3) AT5G26580 51 / 9e-08 MADS AGL34 AGAMOUS-like-34 (.1) AT1G31630 49 / 3e-07 MADS AGL86 AGAMOUS-like 86 (.1) AT5G27810 47 / 3e-07 MADS MADS-box transcription factor family protein (.1) AT1G65300 49 / 4e-07 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028653 [exp] 213 / 3e-71 AT1G22590 91 / 2e-23 AGAMOUS-like 87 (.1.2) Lus10023294 [exp] 72 / 2e-16 AT1G22590 52 / 2e-09 AGAMOUS-like 87 (.1.2) Lus10023293 [exp] 66 / 6e-14 AT1G22590 48 / 2e-07 AGAMOUS-like 87 (.1.2) Lus10022316 [exp] 61 / 3e-11 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 53 / 2e-08 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022325 [exp] 51 / 8e-08 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10032108 [exp] 51 / 9e-08 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10014578 [exp] 48 / 6e-07 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10007711 [exp] 41 / 6e-05 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107600 [exp] 89 / 2e-22 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.005G002400 [exp] 67 / 1e-13 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 57 / 6e-10 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 55 / 3e-09 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 53 / 1e-08 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.002G255700 [exp] 42 / 0.0001 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 42 / 0.0001 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 40 / 0.0004 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10000974 pacid=23145880 polypeptide=Lus10000974 locus=Lus10000974.g ID=Lus10000974.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGAAAGGTGCGACATGAGTTCATTGCTAAAGAAGCTGCTAGAAAAACAACTTTCAAAAAGAGGAAAACTGGACTGTGGAATAAATTAAGGG AGATCTCAACTCTTTGCGGAGTCGCAGCTTGTGGAGTCATCTTCTCCAACTTCGCCGGAAAGGGTAAGGAAAACCAACCAAAGGTGGAGGCTTGGCCATC TGGTCCAGAAGCCGTTGACATGCTGAAGAAGGTGAAGGATTTGCCTGAGAAAAGGCAAAAGAAGTACAAACTGAACCACGAGTCGCTATTGAATGCGAGA GTGGAGAAGTTGGAGGAGAAGCTGAAGAATGAGATCGAGAATAACCAATGGCTCGAGATAGAGTGGCTACTCGAGCATGGAGATGATGAGCATGTGGAGG GAGCGTTGAGTGGCGGCTATAGAGATGCGAATGACCTCGAAAAATTGAGGAGTATGAGCGAGAAGGTTGAGGAGCTGATTAGGCAGGTTGATGAGCGGAT TGAGGATCTCGAGAACGAGTGA
AA sequence Show only first row Show all	>Lus10000974 pacid=23145880 polypeptide=Lus10000974 locus=Lus10000974.g ID=Lus10000974.BGIv1.0 annot-version=v1.0 MGRRKVRHEFIAKEAARKTTFKKRKTGLWNKLREISTLCGVAACGVIFSNFAGKGKENQPKVEAWPSGPEAVDMLKKVKDLPEKRQKKYKLNHESLLNAR VEKLEEKLKNEIENNQWLEIEWLLEHGDDEHVEGALSGGYRDANDLEKLRSMSEKVEELIRQVDERIEDLENE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10000974 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018411 [exp]	16.2	0.6542
AT1G20580			Small nuclear ribonucleoprotei...		Lus10013227 [exp]	20.2	0.7139
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	21.9	0.6599
AT1G03687			DTW domain-containing protein ...		Lus10018590 [exp]	50.3	0.6771
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	64.1	0.6690
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	68.6	0.6357
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	72.6	0.6546
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	78.5	0.6369
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10010749 [exp]	86.7	0.6482
AT4G17085			Putative membrane lipoprotein ...		Lus10042735 [exp]	94.4	0.6321

Compare expression of checked genes

Lus10000974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.