Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033137 [exp] 340 / 5e-118 ND / Lus10001193 [exp] 309 / 2e-105 ND / Lus10019049 [exp] 257 / 3e-85 ND / Lus10029529 [exp] 264 / 9e-85 ND / Lus10016136 [exp] 241 / 6e-77 ND / Lus10012377 [exp] 226 / 7e-74 ND / Lus10042578 [exp] 209 / 2e-66 ND / Lus10039943 [exp] 211 / 7e-66 ND / Lus10030337 [exp] 203 / 7e-65 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000977 pacid=23163399 polypeptide=Lus10000977 locus=Lus10000977.g ID=Lus10000977.BGIv1.0 annot-version=v1.0 ATGGTCGAAAGTGATTGGGCCAATGTTGGAGTGTTGATCGAGTACCTAACCAGTGAGTTGCTTCCGTGCAAGACTCAATGGGCTCATTGCGATAATAGGG TAGAATCCCAACACTCGTCGCTGAAGACGTGGTACAACTCTTCCAATCAAGCTGTTGATTCTCTGTTCGAGGGCTACCATGCATCCATCGAGGGGCAGGT CATTGAAGTTCAGAAGGCATTGGATGACTCTTGTGCAAATGTGTACCGTAACGCGCAAAGACCATCATTTGTTTATCTCAATAATGCAGTCTCGGCATGG GCAATTGAGCTTTTGACAGAAGAGCTCTCGAAGGTAACACCATGTGACTGTGTAGTGGAGACAACGCATGGAATCCCATGTACTTGTAGTTTGCATTCTA AGGAGGCCGCTGACGAGGAGTTGAAACCATATCACTTGCATAAATTTTGGCGTTCATTGTCGTACACGAGCCCGGCAGAGCACGAGATCTGGGCTGAGCA TGATGCTGCGGACCGCCACATTCTTGACGGGATGGTTCAGACTATTTGCTCTAGAGGAGGGCCATCCGTCCGGGCGTTGAGTCGATTAGTTCGGTCAGCA TTTGAACCCGAGTCTGAAGGTTTCATGGAACTAAAGGTTGCTGATGCTCCTAAAGGCCGACCGCGTGCAAGAAAGACCGACCGTCGAAATCCTTCTTGGC ATGAGCATGCTAGTGCACAGTGTACTCCTCCCAAAAGCAGAGGTAGCTCGACTAGATCTACACCTTCCTCGAAGGGTACTACTTCCTCGAAGGTGACCGC GTCGAACACTTGCCCGACTCCGGCCTCATCACTTCCAACTAGTGGGTATGCCACCATATTTAACTGGACTTTCGTTGTCTTCGGACCTGGATTGCGAGGG GTACCGTATGGGGAGACTTACCTACCATTGATTGTACAAGACGGCACAACGGTACCAAGAGGTGTGTCGTATATAGTGTGTACCGGGAATCACTGGGTCG TGCTCACTTTAGATGATGATCTTCGGGATTTACCCATCCCGGGGAAGTCTATGTTTTGGAGTTACTGGGCGCAAGACCACTCTAAACAGATGTGGCAACA TGACTTATATGGTGATGAGCATGCAGAGTATGTACGGTTGAATCTGTAG
AA sequence Show only first row Show all	>Lus10000977 pacid=23163399 polypeptide=Lus10000977 locus=Lus10000977.g ID=Lus10000977.BGIv1.0 annot-version=v1.0 MVESDWANVGVLIEYLTSELLPCKTQWAHCDNRVESQHSSLKTWYNSSNQAVDSLFEGYHASIEGQVIEVQKALDDSCANVYRNAQRPSFVYLNNAVSAW AIELLTEELSKVTPCDCVVETTHGIPCTCSLHSKEAADEELKPYHLHKFWRSLSYTSPAEHEIWAEHDAADRHILDGMVQTICSRGGPSVRALSRLVRSA FEPESEGFMELKVADAPKGRPRARKTDRRNPSWHEHASAQCTPPKSRGSSTRSTPSSKGTTSSKVTASNTCPTPASSLPTSGYATIFNWTFVVFGPGLRG VPYGETYLPLIVQDGTTVPRGVSYIVCTGNHWVVLTLDDDLRDLPIPGKSMFWSYWAQDHSKQMWQHDLYGDEHAEYVRLNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000977 [exp]	0	1
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	2.0	1.0000
					Lus10000363 [exp]	2.8	1.0000
					Lus10025781 [exp]	3.2	1.0000
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	3.7	1.0000
					Lus10003285 [exp]	4.9	1.0000
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	6.0	1.0000
					Lus10004996 [exp]	6.6	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	8.9	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	9.0	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10002747 [exp]	10.0	1.0000

Compare expression of checked genes

Lus10000977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.