Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19710 293 / 2e-83 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 265 / 5e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G34220 246 / 6e-70 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G35730 241 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 213 / 2e-61 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G13340 124 / 3e-30 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 119 / 2e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 111 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 106 / 4e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 102 / 4e-23 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040542 [exp] 1568 / 0 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10006061 [exp] 256 / 1e-74 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 253 / 2e-73 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 228 / 4e-65 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 226 / 3e-64 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041442 [exp] 179 / 5e-50 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10041468 [exp] 164 / 2e-43 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 161 / 2e-42 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033552 [exp] 140 / 6e-36 AT1G13340 208 / 6e-64 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149800 [exp] 471 / 1e-146 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 244 / 3e-69 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 239 / 7e-69 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 236 / 6e-67 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 223 / 7e-65 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.010G127000 [exp] 161 / 2e-42 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 137 / 1e-35 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 135 / 2e-32 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G100900 [exp] 131 / 3e-31 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G038600 [exp] 124 / 6e-29 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10000978 pacid=23163392 polypeptide=Lus10000978 locus=Lus10000978.g ID=Lus10000978.BGIv1.0 annot-version=v1.0 ATGCCTATGCTGCACAAGAGCTTCAAGCCTGCAAAATGCAAAACGGCATTGAAGATGGCATCATCCCGAATCAAGCTGCTGAGGAACAAGAGAGATGTGC AATTGAGGCAGTTGAGGAAAGAAGTCGTTCAGTTGCTCGCCGCCGGCCATGATCGGACTGCTAGGATTCGAGTGGAACATGTAGTTAATGAAGAGAAGAC GATGGCAGCATATGACCTTATTGAGATATACTGTGAACTGATTGTGGCCCGCTTGAACATGATTGAGTCACAAAAAATCTGCCCCGTTGACTTGAAGGAA GCCATCTCTAGTGTAATTTTTGCTACCCCTAGATGTGCAGACTTACCCGAATTGATGGATGTTAAAAAGAACTTCGCAGCAAAATATGGAAAAGATTTTG TCTCTGCAGCCATTGAACTACGTCCAAACAGTGGGGTTAGCCGCTTACTGGTTGAGAAATTGTCTGCAAAAGCACCTAATGGCCCGGAGAAGATGAAAAT TTTGAGTGCAATTGCTCACGAACACAATGTTAAGTGGGATCCCAAATCGTTTGAATATGATATCAAGCCTTCTGAGGACTTGCTTAATGGACCTGGAAAA TTTCAACAGGAAAGTGCGATGCCTGCAGAAACTCATAATGCGGAGCCATCCACGAACTTCAACCAGAGCGAGGCTTCATTCCATGGCAGGTATGATGCAA GAATGAACTCATATGCCCCCAGTTCCCACAGATCTTCTCATATGCAATCTCCTAGTGTTGATGATTTTGGTCCAAGTCACACAAAGCCCTCAGTAGTTCC TCAGCTAGACAACATGACTCCAGATTCAGGACCTGAAGCTGTGGAATTTAGACATCCACATGATAAGCCAGGGAACAATTTCTCATCCCGAAGCCAACAG TGGAATATGGAGTTCAAGGATGCCACAGCTGCTGCCCAGGTCGCTGCCGAATCTGCAGAGCGAGCAAGCATGGCTGCCAGGGCTGCGGCAGAACTTTCAA CTCGTGATAACATTAATTGGCAACATTCAAGAGAGCAGCGCTTAGCTTCGGGTTCTTCACCAAGATATGAAGGGCATTATACTGGCTCTAGATTGCAAGG TGAGGAACTTTCCAAGGATATGGCAAACACATCCAAAATTAAGTCTCATGTGTCCAATGAACAGCTTGATGACACTGGAGAAGATGAGCTAGCTGCATTG TCTGAAAGGTTCTACAATCTCAAGAGCCGAATGCCTACCTCAGACTCCAGCGGTCCTCCTGAGGTTGTTTTTCCATCTATGAGTAATCCCCACACACCGG AGAGACATTCTCGAAGGAGCTCATCTGAATCAGAGAGGAGCGATATTTCAAGTGACACAAGCATAAAAAGACAGCCGATTGACAAAGAGTTACATATTGG TGGTAACATTCATGGTGGAATGAAACATGAACTTGTTGATAGTTTTAAGGAATCAGGTGGCCAAGAACAGTCTAGTAGTCTTCTTTCGCATTCCGATTCA CGGATCCCAAGGGTTGATGAGAATTTGACTTCAAGCTGGGACCATGGTGAATCAAGTGAAGATACTATTGGTGATCCTTTTTACATCAGTCAGGAAAGAA GTCAAGTAAACGCCCAAGAAACAAGCTCGTATGACATTGCCACTGCAGCTTTTGATGATTATGGTTCTGATGATGACGTCTATGATTTTCATGCCAAGGA TGAAGTCAGGGACCAAAAGTCCAATTTGATTATGTCACCAGAAAGTGAAAAAACCTCTCATATCCCAGCAATGGCAAATGCATGGAGTCCTGGGCAGAGC ATGGTTGAGTCTCCAAGAAAGTCAAGTTCGTCCTCTCTTTTTACCTCTGAGCAGCATCCTTCTTCTGTATTTTCAGGTGGTTTAACCGCCAACATAATGT CCTCCCAGCCAGGCGATTCGTTACCAGTGACTTTTGATGACTCAGACGGTTCAAGTTCCGAAAATGAAGAGGATTCAAGTGAGGCGAACGTTGGTGAACC AGGAATTACCAGCACCTCATCTCATGCTGATTCCAGAAATCTTGACCTTCCCCACGGTGAGAGGTCTCCCTGGAGGGGATCTTTACTTGACGGAAAGGAT GAGGTAAAGGAAAGTAGAAAGAATTTCTCACGGCCTTCTTCAGTTGACTTTGATGACAGAATGATGCACCATCAGATTAACAAGGAAGTTGAAGCTGGTG TGAAGGCTGATACACAATTTGGTTATTCCAATGTCCATCAAGATCGCCCTTCAATAAGATCTGTGGAATTGCAACCCAAGTCAAGTGATGTGAAGGAGAA GTTGCAAACACGAGGACCTCCATCTACTAAAGATTATGGAGATGGAAGTCAGCAGCCACGAGGATCAGTGGAGGATACTGATTCTGTCAAAGAATCTGAG TCTGAAAGTGGTTTGGAATTGAACTTTGAATTCCTGGCAGGTGGCTTTCGGAATAAGGGCTATAAACATCGACCTTACCGTAGCAATGTTGCTAGCAGAT CTTCACTGTCTAAGCACTCTTTGGAAGACTCTGTTACTGGTACGGAGCATTCAACATCTCTCGTAGGTGATGTTAGCTCTAGAGAAAATGGGCAAGAGAC ATCCAGTAGGGGAGTGAACCCAGAAGCTGGTAGAAGTAATCAAGTTAGAAAAGATTGTTTAAGTGGTGATTCAGCTGGTAGGAAGGAAGAGCAACACACA TGGGGATCGGCAGTTGAAGTTGACAAAATTTCAGGTTCCAGAACCTACTTCGATTCTGATGATAGTGATGTTGGCGAGGAGCTTTCTAAGCAGAAATCAA GAGGGAAAGTTGTTCCAGCTCAGGCATTTTCTCGGCGAACGAAGGGGGGTGTTGCTTCCAATTCAAATATAAGTTCATCTGCAAAGACGAGAGGAAATGT TAACGTTAGCCATGGTGATGTAGCAAAGTCATCCTTGAGGGGTGATGAAGTTGACAGATCAGTTGAAGAAGATGAATCGACTGAGAGGAGGAAGTCTTCA CTTGTTGGCAGTCATCAATCGCAATCAAAGGAATCACGTTGGGCAACCAGTCCGCAGGCAGGTCCAGACAAGATAGGGTCATCTGTTGGGAAACAAGCAT CGAATCATGTAGCTCCGAAACAAGCATCGAAGCCTGTAGCTCCGAAAGCAGCTTCAAAACAAGATTCGATGAACAGAGCTAGTCATGTTCATCCGAAACT TCCTGATTACGACAGTTTTGAAGCACACCTACTGTCTCTTCGCCAGAAGCCCCACAAAGAACCATACTTCCATTCCTTTTTTTTCACTGACGAAGCTGCT TGTGGCTACCGCCTAGGAAGGGACGCCACCCAGTTGGGTGGAAGAGTCCCTGTGTTTGCGGAAGTAGCTGCCCAATTTGCACTTTCGTTGAGTGCTCGAG GAGTAAATCCCACCCGGATACCGGGATTGGAAGACAGGGCTGTGCAGATTCGTTGTAAATTACCATGGCACGCCAAGGCCCATCGGATTTGA
AA sequence Show only first row Show all	>Lus10000978 pacid=23163392 polypeptide=Lus10000978 locus=Lus10000978.g ID=Lus10000978.BGIv1.0 annot-version=v1.0 MPMLHKSFKPAKCKTALKMASSRIKLLRNKRDVQLRQLRKEVVQLLAAGHDRTARIRVEHVVNEEKTMAAYDLIEIYCELIVARLNMIESQKICPVDLKE AISSVIFATPRCADLPELMDVKKNFAAKYGKDFVSAAIELRPNSGVSRLLVEKLSAKAPNGPEKMKILSAIAHEHNVKWDPKSFEYDIKPSEDLLNGPGK FQQESAMPAETHNAEPSTNFNQSEASFHGRYDARMNSYAPSSHRSSHMQSPSVDDFGPSHTKPSVVPQLDNMTPDSGPEAVEFRHPHDKPGNNFSSRSQQ WNMEFKDATAAAQVAAESAERASMAARAAAELSTRDNINWQHSREQRLASGSSPRYEGHYTGSRLQGEELSKDMANTSKIKSHVSNEQLDDTGEDELAAL SERFYNLKSRMPTSDSSGPPEVVFPSMSNPHTPERHSRRSSSESERSDISSDTSIKRQPIDKELHIGGNIHGGMKHELVDSFKESGGQEQSSSLLSHSDS RIPRVDENLTSSWDHGESSEDTIGDPFYISQERSQVNAQETSSYDIATAAFDDYGSDDDVYDFHAKDEVRDQKSNLIMSPESEKTSHIPAMANAWSPGQS MVESPRKSSSSSLFTSEQHPSSVFSGGLTANIMSSQPGDSLPVTFDDSDGSSSENEEDSSEANVGEPGITSTSSHADSRNLDLPHGERSPWRGSLLDGKD EVKESRKNFSRPSSVDFDDRMMHHQINKEVEAGVKADTQFGYSNVHQDRPSIRSVELQPKSSDVKEKLQTRGPPSTKDYGDGSQQPRGSVEDTDSVKESE SESGLELNFEFLAGGFRNKGYKHRPYRSNVASRSSLSKHSLEDSVTGTEHSTSLVGDVSSRENGQETSSRGVNPEAGRSNQVRKDCLSGDSAGRKEEQHT WGSAVEVDKISGSRTYFDSDDSDVGEELSKQKSRGKVVPAQAFSRRTKGGVASNSNISSSAKTRGNVNVSHGDVAKSSLRGDEVDRSVEEDESTERRKSS LVGSHQSQSKESRWATSPQAGPDKIGSSVGKQASNHVAPKQASKPVAPKAASKQDSMNRASHVHPKLPDYDSFEAHLLSLRQKPHKEPYFHSFFFTDEAA CGYRLGRDATQLGGRVPVFAEVAAQFALSLSARGVNPTRIPGLEDRAVQIRCKLPWHAKAHRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19710			Regulator of Vps4 activity in ...		Lus10000978 [exp]	0	1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	2.4	0.9017
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10033467 [exp]	3.9	0.8390
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	6.0	0.8688
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	7.2	0.8783
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	10.0	0.8742
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	11.6	0.8728
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	12.6	0.8744
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	14.9	0.8150
AT3G49490			unknown protein		Lus10015581 [exp]	20.8	0.8345
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	23.1	0.8454

Compare expression of checked genes

Lus10000978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.