Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29510 619 / 0 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT2G19670 575 / 0 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT3G20020 251 / 2e-79 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT3G12270 218 / 5e-65 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT5G49020 186 / 9e-54 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT1G04870 181 / 7e-53 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G06930 183 / 2e-52 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT4G16570 61 / 1e-09 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040546 [exp] 827 / 0 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008577 [exp] 625 / 0 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10010162 [exp] 247 / 1e-78 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 247 / 1e-77 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10008664 [exp] 201 / 2e-58 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10026158 [exp] 197 / 3e-57 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10043412 [exp] 187 / 1e-53 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10034172 [exp] 186 / 2e-53 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043295 [exp] 177 / 2e-51 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149400 [exp] 635 / 0 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 627 / 0 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.007G000300 [exp] 249 / 5e-79 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.001G030200 [exp] 218 / 9e-65 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.008G222700 [exp] 187 / 5e-54 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.010G014600 [exp] 187 / 6e-54 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.018G071200 [exp] 182 / 2e-53 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.014G004000 [exp] 78 / 2e-16 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.003G076500 [exp] 71 / 7e-13 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06325 [flax] [poplar] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Lus10000982 pacid=23163394 polypeptide=Lus10000982 locus=Lus10000982.g ID=Lus10000982.BGIv1.0 annot-version=v1.0 ATGGGCCGCCGGAAGCAGAATACAAACAGCAGCAGCTCAGCCAGCTTCCCAACTCCCCAGAATCAGAGCACAAACCTCCGGTTCCAGGACGCCGACGAGG ATCCTACCATGGACAGCTCAATTCCCGATGCCTCCTTTACTACTGTTCCCACCGACTTGCCCATTGCTATGGACGATGACTCAATGTCTGAAGCCAATGC AACGCTTACTGGCCCCGCTGACGAAGACGAGCAGACCAGCGCCGATTACTACTTTGATTCGTATTCTCACTTCGGTATTCACGAAGAGATGCTGAAGGAC GTGGTGAGGACTAAGACGTACCAAAATGTTATTTATCAAAATAAGTTCCTCTTCAAGGACAAAGTTGTACTTGATGTTGGTGCCGGGACTGGAATTTTGT CTTTGTTCTGTGCAAAAGCTGGCGCGGCACATGTTTATGCGGTTGAGTGTTCGCAGATGGCTAACATGGCAAAAGAAATTGTTGCATCAAACGGTCTCTC TGATGTTATAACGGTTTTAAAGGGGAAGATTGAAGAGATAGAGCTACCAGTGAATAAAGTGGATGTAATAATTTCAGAGTGGATGGGATACTTTCTCTTG TTTGAGAACATGCTGGATACAATTTTGTATGCGCGTGATAAATGGCTTGTCAATGATGGAATTGTGCTGCCTGATAAAGCGTCTCTTTACTTGACAGCCA TTGAAGATGCAGAGTACAAACATGACAAGATTGAATTCTGGAATAGTGTCTATGGCTTCGACATGAGCTGTATCAAGAGGCAAGTAATTATGGAACCTCT AGTTGACACTTGTGACCAAAATCAAATTGTTACAAATTCACAACTACTAAAGACTATGGATATCTCCAACATGACTTCTGGTGATTGCTCGTTTACGGCT CCTTTCAAGCTAGTGGCAGAACGTAACGATTTCATCCATGCATTAGTAGCCTACTTTGATGTAGCGTTTACGAAATGCCACAAAATGATGGGGTTCTCCA CAGGCCCTAGGTCGAGGGCAACACATTGGAAACAGACAGTCCTGTATTTGGAAGAAGTGCTGACAATATGTGAAGGAGAGGTGCTAAGTGGAAGCATGAC GGTTTCACCAAATAAGAAGAATCCTAGGGACGTTGATATATTGGTCAAATATGCATTGGATGGGAAGCGTTGTTCTGTTTCAAGGAGTCAGCACTTCAAG ATGAGATGA
AA sequence Show only first row Show all	>Lus10000982 pacid=23163394 polypeptide=Lus10000982 locus=Lus10000982.g ID=Lus10000982.BGIv1.0 annot-version=v1.0 MGRRKQNTNSSSSASFPTPQNQSTNLRFQDADEDPTMDSSIPDASFTTVPTDLPIAMDDDSMSEANATLTGPADEDEQTSADYYFDSYSHFGIHEEMLKD VVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKEIVASNGLSDVITVLKGKIEEIELPVNKVDVIISEWMGYFLL FENMLDTILYARDKWLVNDGIVLPDKASLYLTAIEDAEYKHDKIEFWNSVYGFDMSCIKRQVIMEPLVDTCDQNQIVTNSQLLKTMDISNMTSGDCSFTA PFKLVAERNDFIHALVAYFDVAFTKCHKMMGFSTGPRSRATHWKQTVLYLEEVLTICEGEVLSGSMTVSPNKKNPRDVDILVKYALDGKRCSVSRSQHFK MR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	0	1
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	1.4	0.9573
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008664 [exp]	1.7	0.9558
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	3.5	0.9495
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	4.5	0.9548
AT5G55610			unknown protein		Lus10004412 [exp]	5.7	0.9338
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	5.8	0.9563
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	5.9	0.9522
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	6.5	0.9515
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	7.5	0.9355
AT5G01660			unknown protein		Lus10012220 [exp]	7.7	0.9350

Compare expression of checked genes

Lus10000982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.