Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18550 375 / 1e-129 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 308 / 2e-103 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 299 / 1e-99 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 245 / 7e-79 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 238 / 8e-75 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 234 / 3e-73 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 219 / 2e-67 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 196 / 8e-59 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 135 / 3e-36 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 132 / 4e-35 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013932 [exp] 575 / 0 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 339 / 1e-115 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013935 [exp] 285 / 1e-94 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013936 [exp] 275 / 2e-90 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 252 / 2e-81 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 248 / 7e-80 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 209 / 1e-64 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10033619 [exp] 199 / 8e-63 AT4G18550 235 / 1e-75 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 203 / 4e-61 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054800 [exp] 434 / 3e-153 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 432 / 4e-152 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 303 / 9e-102 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 288 / 1e-95 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 276 / 8e-91 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 254 / 3e-82 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 243 / 8e-77 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 241 / 3e-76 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 236 / 3e-74 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 192 / 3e-57 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10000985 pacid=23162251 polypeptide=Lus10000985 locus=Lus10000985.g ID=Lus10000985.BGIv1.0 annot-version=v1.0 ATGTCGAGGGAGGCATGGAGCAAGGAGTCAAACTGGATGGGGTACGTGGCGGTGGCGACGGACAAGGGGGCGGCAGCTCTGGGGAGAAGGGATATCGTGG TAGCTTGGAGAGGAACGGTGCAGACATTGGAATGGGTCAATGATTTGGATTTTCTTTTGGTTTCCGGCGATAAGGTTTTTGGGGAGAAGAGTGAGGTTAA GGTTCATCAAGGTTGGTATTCCGTTTACACTTCCGACGATGCCCGGTCGTCGTATAATACCAGCAGCGCCAGAGACCAGGTAATGGATGAGATAAGAAGG TTAGTGGAAGAGTATAAGGACGAGGAAACCAGCATAACGGTAACCGGCCACAGCCTAGGAGCAGCCGTCGCAACCTTAACCGCAATCGACATAGTAATCA ACGGGTTCAACCGCCGGTCCAACAATTCCGTCACTCATCCTCACAAACCATCCAGCTGTCCGGTCACGGCCATAGTCTTTGCATGTCCACGTGTGGGTGA CTCAGCATTCAAGGAACTCTTTGGCCAATCGAAAGACCTTCGTGCCTTGCGTGTAGGTAATGCGATGGACGTGGTCCCCAACTACCCGTTGATTGGCTAC GAGGTAGTCGGCGAGGAGTTGGGGATCGACACGAGGAAGTCCAAGTACTTAAAGGGGCCTGGGAACCTGTCCGCGTGGCATAATTTGGAGGCGTACTTGC ATGGCGTGGCGGGGACCCACGGCTATGATGGGGATTTCGAGCTGGCGGTGGATAGGGACGTGGCGCTGGTGAATAAGTCAATGGATGCGTTGAAGGATGA GTATTTGGTTCCAGTTTCGTGGCGGGTTATGAAGAATAAAGGAATGGTTCAAAATTCGGACGGATCGTGGGTGTTGAATGATCATGAACAAGATGTTGTT GAGAGGTGA
AA sequence Show only first row Show all	>Lus10000985 pacid=23162251 polypeptide=Lus10000985 locus=Lus10000985.g ID=Lus10000985.BGIv1.0 annot-version=v1.0 MSREAWSKESNWMGYVAVATDKGAAALGRRDIVVAWRGTVQTLEWVNDLDFLLVSGDKVFGEKSEVKVHQGWYSVYTSDDARSSYNTSSARDQVMDEIRR LVEEYKDEETSITVTGHSLGAAVATLTAIDIVINGFNRRSNNSVTHPHKPSSCPVTAIVFACPRVGDSAFKELFGQSKDLRALRVGNAMDVVPNYPLIGY EVVGEELGIDTRKSKYLKGPGNLSAWHNLEAYLHGVAGTHGYDGDFELAVDRDVALVNKSMDALKDEYLVPVSWRVMKNKGMVQNSDGSWVLNDHEQDVV ER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10000985 [exp]	0	1
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10022610 [exp]	1.7	0.9297
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10040461 [exp]	4.5	0.8806
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	9.9	0.8606
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	13.4	0.8431
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021509 [exp]	14.8	0.9029
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	18.1	0.9104
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	25.9	0.8553
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	27.9	0.8150
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	31.0	0.8828
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	33.0	0.8777

Compare expression of checked genes

Lus10000985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.