Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18570 407 / 5e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 328 / 2e-102 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G07120 270 / 4e-85 unknown protein AT1G48280 260 / 3e-79 hydroxyproline-rich glycoprotein family protein (.1) AT4G04980 61 / 2e-09 unknown protein AT1G11070 44 / 0.0003 unknown protein AT1G61080 44 / 0.0004 Hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013931 [exp] 734 / 0 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 553 / 0 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 551 / 0 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 325 / 4e-100 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 324 / 1e-99 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10031863 [exp] 277 / 2e-87 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 177 / 2e-50 AT1G07120 267 / 3e-87 unknown protein Lus10038307 [exp] 89 / 4e-18 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 84 / 2e-16 AT4G04980 347 / 1e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064500 [exp] 494 / 1e-169 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G054900 [exp] 454 / 1e-153 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 348 / 2e-110 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 345 / 3e-109 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 325 / 4e-100 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G279000 [exp] 307 / 6e-99 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 305 / 7e-98 AT1G07120 434 / 4e-151 unknown protein Potri.010G003100 [exp] 271 / 8e-84 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G047100 [exp] 76 / 4e-14 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 70 / 2e-12 AT4G04980 387 / 4e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000986 pacid=23162256 polypeptide=Lus10000986 locus=Lus10000986.g ID=Lus10000986.BGIv1.0 annot-version=v1.0 ATGGTCGCCGGTAAAGTCAGATCAGCAATGGGGTTCCAGAAATCACCGGCGCCGGGAGATCACAACCCACCACCACCGGCGCCGCCTCCTAAACCGGCGG GAAAGACGGGATTTTCACGCTCCTTCGGAAACTACTTCCCACGCGCCTCCGCACAGGTCCAGCCCAAGCCTCCCGACGTGGCGGAGCTCCTCCGCCTCGT GGAGCAGCTTCTCGTGGAGCAGCTCCGGGAGCGAGAGTCGAGGCTTAAAACGGAGCTAATCGAGTTCAAGATTATGAGAGAGACCGCCGCCATTGTCCCC AGGCTGGAGGCGGAGATCGAGGCGAGGAATTTTGAACTTGCGTCGGCGGAACAGAGGATTAAGGAGCTGGAAGAGGAGAAAGTTGAGAGGGAGAAGAGGA TGAAGGATATGGAGGAGGAGATTCAGGCGTTGAGGAAAACGGCGTCGGATTGTAAGGAGAGGTTTCAGTTTCAGGGGTTGATGGAGCTGACGATGAAGTC GAGTCTGATTAGGAATTTGAAGAAAGGGGAGGTAAGATCATCGACGACGATGGCGAAGTGGTGCTCTTCGGACGGCGCCGTTTTGGGGGAAAACGGTGCG TTGAAGGCGGAGGAACGAGTTGTTGTGCCGAGGCTGACTAGATGCGACTCGGCGGAACTCGCTGAGTCGACTTTGTCGAGTCTCCGATCTCGCGGTCCGA GAATCCCGAATCCGCCGCCGAAGAGGTGTTCTTCTTTGCCGTCTTCCGTCGTCGAACAATCTGTTACGTCGTCTGCACCGCCACCGCCGCCTCCTCCTCC GCTAGCTGTGAAAACAACAACGACTGCAGCTTCAGCTCCGCCGCCTCCTCCGCCGCCGCCGCCGCCTTTACCGCCGAAGGGAGCAAGAGCTGGAGTGGCG AAGGTGAGGCGAGTGCCGGAGGTGGTGGAGTTCTACCACTCACTAATGCGGAGGGATTCCAGGAAGGATTCCGGCGTCGGAGCTGCTTCCACCGTCAGCT CCCGTGACATGATCGGAGAAATTGAGAACCGGTCAACGCATTTACTAGCGATAAAAACGGACGTGGAAACGCAAGGGGAGTTCATAAAGTTCCTGATCAG AGAAGTAGAAAGCGCTGCGTTTACAGACATTGAAGAAGTAGTACCCTTCGTGAAATGGCTAGACGATGAGCTCTCCTTTCTGGTGGACGAAAGGGCGGTG CTGAAGCACTTCGACTGGCCGGAGCAGAAGGCTGATGCATTGAGGGAAGCTGCATTTGGGTACTGTGATCTGAGGAAGGTGGAATCAGAAGCATCGTCTT TCAGGGATGTTGCTCGGGAGCATTGCTCTTCAGCTCTCAAAAAGATGCAGGCTTTGCTCGAAAAGTTAGAGCATGGTGTTTACAGCTTGTCAAGACTGAG AGAATCAGCAACGAAACGGTACAAGGAGTATCGGATTCCGATTGATTGGATGCTTGAAACAGGGCTTGTTAGCCAGATCAAATTAGCATCGGTCAAGCTG GCCATGAAGTACATGAAACGGGTATCCGCAGAGCTTGAGTCTGTCGATAGTCCTGCTGAAGAAGAGGAGCTCATCGTCCAGGGTGTTCGCTTCGCCTTCC GAGTGCATCAGTTTGCAGGAGGGTTTGATGGGGAGACGATGAGGGCGTTCCAGGAGTTGAGGGATAAAGCGAGGCCGGTTTGCAGCAGCAGATTCACAGC TTGCTAA
AA sequence Show only first row Show all	>Lus10000986 pacid=23162256 polypeptide=Lus10000986 locus=Lus10000986.g ID=Lus10000986.BGIv1.0 annot-version=v1.0 MVAGKVRSAMGFQKSPAPGDHNPPPPAPPPKPAGKTGFSRSFGNYFPRASAQVQPKPPDVAELLRLVEQLLVEQLRERESRLKTELIEFKIMRETAAIVP RLEAEIEARNFELASAEQRIKELEEEKVEREKRMKDMEEEIQALRKTASDCKERFQFQGLMELTMKSSLIRNLKKGEVRSSTTMAKWCSSDGAVLGENGA LKAEERVVVPRLTRCDSAELAESTLSSLRSRGPRIPNPPPKRCSSLPSSVVEQSVTSSAPPPPPPPPLAVKTTTTAASAPPPPPPPPPPLPPKGARAGVA KVRRVPEVVEFYHSLMRRDSRKDSGVGAASTVSSRDMIGEIENRSTHLLAIKTDVETQGEFIKFLIREVESAAFTDIEEVVPFVKWLDDELSFLVDERAV LKHFDWPEQKADALREAAFGYCDLRKVESEASSFRDVAREHCSSALKKMQALLEKLEHGVYSLSRLRESATKRYKEYRIPIDWMLETGLVSQIKLASVKL AMKYMKRVSAELESVDSPAEEEELIVQGVRFAFRVHQFAGGFDGETMRAFQELRDKARPVCSSRFTAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	0	1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	1.0	0.9750
AT5G19340			unknown protein		Lus10041215 [exp]	2.0	0.9605
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	4.6	0.9567
AT2G45260			Plant protein of unknown funct...		Lus10009923 [exp]	4.8	0.9338
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	4.9	0.9560
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	5.0	0.9550
AT3G06868			unknown protein		Lus10024784 [exp]	7.4	0.9459
AT5G42330			unknown protein		Lus10030749 [exp]	7.5	0.9520
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	8.4	0.9389
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	9.8	0.9474

Compare expression of checked genes

Lus10000986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.