Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29040 200 / 2e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013930 [exp] 264 / 9e-92 AT1G29040 223 / 1e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064600 [exp] 216 / 3e-73 AT1G29040 229 / 3e-77 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09585 [flax] [poplar] Lin0512_fam Conserved hypothetical protein (Lin0512_fam)
Representative CDS sequence Show only first row Show all	>Lus10000987 pacid=23162259 polypeptide=Lus10000987 locus=Lus10000987.g ID=Lus10000987.BGIv1.0 annot-version=v1.0 ATGGCTGCCGATGATCAAAGCGGAAGCGCGGCCGTCAATCCCGATGGACCCATGAAGCTGTTGTTCGTGGAGATGGGAGTCGGATATGACCAGCACGGGC AGGATATTAATGCTGCGGCGATGCGCGCATGCAGGGACGCTATCACTTCTAATTCGATTCCGGCTTTCCGTAGAGGGTCGATTCCTGGGGTGTCAATGGA GCAAATGAAGCTGCAGATCAAACTGGGAGTCCCTCATTCTCTGCAGCAATACTTGGATATCGAGAGGGTGAATGGCAAGATTCTCAGCGTTGAAGTTGTT GATGGCGGACTATTATGCTCAAGTGGTGTAGTTGTAGAAGAAATGGGGGATAAGAACGACGACTGCTACATTGTTAATGCTGCTGTCTATATTGGGTACT AG
AA sequence Show only first row Show all	>Lus10000987 pacid=23162259 polypeptide=Lus10000987 locus=Lus10000987.g ID=Lus10000987.BGIv1.0 annot-version=v1.0 MAADDQSGSAAVNPDGPMKLLFVEMGVGYDQHGQDINAAAMRACRDAITSNSIPAFRRGSIPGVSMEQMKLQIKLGVPHSLQQYLDIERVNGKILSVEVV DGGLLCSSGVVVEEMGDKNDDCYIVNAAVYIGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29040			unknown protein		Lus10000987 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	20.7	0.7827
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	51.7	0.7581
AT1G67340			HCP-like superfamily protein w...		Lus10006418 [exp]	69.2	0.6955
AT4G31460			Ribosomal L28 family (.1)		Lus10028995 [exp]	94.6	0.7360
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10020871 [exp]	111.4	0.7138
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	122.5	0.6751
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027410 [exp]	147.1	0.7165
AT2G41760			unknown protein		Lus10007544 [exp]	189.6	0.7013
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10006878 [exp]	201.8	0.6912

Compare expression of checked genes

Lus10000987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.