Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 526 / 0 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 526 / 0 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 425 / 4e-149 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 421 / 1e-147 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 377 / 3e-130 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G78710 373 / 1e-128 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT3G14850 368 / 1e-126 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT5G58600 335 / 3e-113 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 323 / 9e-109 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G54260 280 / 8e-92 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013929 [exp] 693 / 0 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 550 / 0 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10033617 [exp] 435 / 4e-153 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10002198 [exp] 426 / 1e-149 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10039559 [exp] 366 / 7e-126 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10019774 [exp] 345 / 1e-117 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 345 / 4e-117 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 344 / 8e-117 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10039557 [exp] 343 / 2e-116 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064700 [exp] 541 / 0 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 523 / 0 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 450 / 5e-159 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 449 / 2e-158 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.013G118500 [exp] 436 / 2e-153 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.003G201700 [exp] 411 / 1e-143 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 409 / 1e-142 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 392 / 5e-136 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 382 / 4e-132 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.004G135600 [exp] 370 / 1e-127 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10000988 pacid=23162252 polypeptide=Lus10000988 locus=Lus10000988.g ID=Lus10000988.BGIv1.0 annot-version=v1.0 ATGATGTCACTTCTTCTGCCAACCATCTTCCTCCTCATTGTAATCTCCTGCACCGCCGCCGCACCAGAAACAGAGCTCTACAATGCGAGCAAGGCACTCG GAGGGAAGAGGCAGACGTCGTGCAATCTCTTCCAAGGGAGGTGGGTCTTCGACAATTCGTACCCGCTCTACGACTCGAAAGCCTGCCCTTTCATCGACGA CGAGTTCGACTGCCTCAAGTTCGGCCGTCCTGACCGGCAGTACCTCAAGTACTCCTGGCGCCCCAGCGCCTGCAACGTGCCCAGGTTTGACGGCGTGGGT TTCCTGAAGAGGATGGCGGGGAAGAAGGTGATGTTCGTTGGGGATTCGCTGAGTTTGAACATGTGGGAGTCGTTGTCGTGTATGATTCATGCGTCGGTGC CTAATGCCCGGACGGTTTTCTCCCGGTCCGGCACGCTCCAAACCGTTAACTTTGTGGACTACAAGGTGACGGTGTACATGTACCGTACGCCGTATTTGGT GGACATAGTTCAAGAGAAGGTTGGTCGGGTTCTGGATCTGGGTTCGATCAAGGCTGGGAATGCGTGGAGAGGGATGGATGTGCTCATCTTTAACTCGTGG CATTGGTGGACTCATATGGGTTCTAAATCTCAAGGATGGGACTACATAAGGGACGGTTCGTCGCTGAAAAGGGACATGGACAGGCTAGACGCATATACGA AAGGGTTAAACACATGGTCAAGATGGGTGGATAGCAATGTCGACCCAGCCAAGACTAAGGTCTTCTTCCAAGGGATTTCCCCTACCCATTATCAGGGGCA GGACTGGAGTGAACCAAAGAAGACTTGTAACGGAGAAGCACAGCCCTTAGCCGGATCGAGTTATCCAGCGGGCGAACCCCCAGCTGCTGCAGTTGTGAAC AGAGTGTTAATGACGATGAAAAGCCGAGTGTATCTACTAGACATAACGACATTGTCACAGTTGAGAAAAGATGCTCACCCGTCTACTTACGGAGGAGGCG GCGGCACAGATTGCAGCCATTGGTGCCTGCCCGGGTTGCCGGATACATGGAATCAGCTGCTTTATGCAGCTCTCATCTCCTGA
AA sequence Show only first row Show all	>Lus10000988 pacid=23162252 polypeptide=Lus10000988 locus=Lus10000988.g ID=Lus10000988.BGIv1.0 annot-version=v1.0 MMSLLLPTIFLLIVISCTAAAPETELYNASKALGGKRQTSCNLFQGRWVFDNSYPLYDSKACPFIDDEFDCLKFGRPDRQYLKYSWRPSACNVPRFDGVG FLKRMAGKKVMFVGDSLSLNMWESLSCMIHASVPNARTVFSRSGTLQTVNFVDYKVTVYMYRTPYLVDIVQEKVGRVLDLGSIKAGNAWRGMDVLIFNSW HWWTHMGSKSQGWDYIRDGSSLKRDMDRLDAYTKGLNTWSRWVDSNVDPAKTKVFFQGISPTHYQGQDWSEPKKTCNGEAQPLAGSSYPAGEPPAAAVVN RVLMTMKSRVYLLDITTLSQLRKDAHPSTYGGGGGTDCSHWCLPGLPDTWNQLLYAALIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	0	1
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	1.0	0.8803
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	2.0	0.8033
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	6.3	0.7777
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	8.8	0.7702
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	11.1	0.7227
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	12.2	0.7447
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10036562 [exp]	12.2	0.6603
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	14.5	0.8024
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	14.5	0.7389
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	15.6	0.7350

Compare expression of checked genes

Lus10000988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.