Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34090 231 / 6e-71 MEE18 maternal effect embryo arrest 18 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013927 [exp] 311 / 1e-101 AT2G34090 640 / 0.0 maternal effect embryo arrest 18 (.1.2.3) Lus10013928 [exp] 109 / 3e-28 AT1G29070 113 / 2e-32 Ribosomal protein L34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065000 [exp] 231 / 2e-70 AT2G34090 622 / 0.0 maternal effect embryo arrest 18 (.1.2.3) Potri.011G064800 [exp] 47 / 3e-06 AT1G29070 106 / 1e-29 Ribosomal protein L34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01933 [flax] [poplar] UPF0052 Uncharacterised protein family UPF0052
Representative CDS sequence Show only first row Show all	>Lus10000989 pacid=23162258 polypeptide=Lus10000989 locus=Lus10000989.g ID=Lus10000989.BGIv1.0 annot-version=v1.0 ATGGCGGATGGTTGGTTGGGGCCCTCCTCCTCCATAGCCAAGACCGCTTCTTCTTCCCTTCTCCTCCGCTCTCCCAACGTTCCTCTGAGATCCATATCCA TGGCGGCCACAGTCTCTCAAACCCAATTCCCCGCCAATTCCTCATCAACAGTCTCCAGCCCTAGGCCTACTCAGCCTTCTCTCTTCGTCTTCTCCGGCGG CACGGCGTTCAATGGCGTTGTGGAAGAGCTCCAGAAGCTCACAACTCGGGTCGCCCATGTTCTTCCCGTCTCCGATGACGGTGGCAGCACAGCTGAGATT GTTCGTGTCCTTGGTGGTCCGGCTGTTGGAGACATAAGGTCGAGGTGTTTGAGGTTGTCTGATCAAAGCACGGTTGAGGCACTGGCCGTTCGTAAGCTGC TTGGTCATAGATTGCCTCTAGATGCTCAGGAAGCCAAGTCAGAATGGTATAGTATTGTGGAAGGAGAGCATGGTTTGTGGAATGGCTTATCTAGGCCTTA TAGTGAAACCATCCGAGCCTTTCTTGTCTATTTCCAGAACGAGGATGGCACTATTATGCGAGGACAAAACGAGATCTCTCATCCAACTATCGGTTCTATG CAACTCATTGATAAGGGATGTTGTTCAGCTCTTCCTTCAAGGATAAAGCGTGTATTCTACATGTCAAGTGAGGGCGGCAATTCACTTCACGAGGTCTTTC CCTCAGTGAACGCTACTGTACTAGACCAGTTGACCAAAGTGGATTGCGTCGTATATGCTATGGGATCGCTTTTTACTTCGATTTGCCCGTCGCTGGTGCT TTTGCTGAATGGTACACTTGATCGTGAGACCATTGGATTTTCTGCTTCGTGCTTCGTTACTGCCATTACGGATGCCTTGAATCGTAGATACGGAGATCCT CACAACTGTCTCGAGAATCCGGCAAAGAACCTTACGACCTTTATCACGTCGGCGCTTCAAAATCGCCCTCCCGGCGGTGGTCTTCATCCGTCGCCGGAAT CCGTGAGTTCTCGCCAGAGACTTACACGACCTGTTCCTTTTAGTAAGGCAAAGCGCCGCCTTCCCAGCTCTCACCACAAACCTTCTACCGCCGCGGTTTC TCCCATTGCTGCCGGAGTTAAAATCTCCAATTCCGAGCGACAAACCTACTCCGATTGGGGGGGGAAATCCGGATATGAATTAGGAAATGCAGATGGAATT CGAAAAGTGTACGATGAATTCGACGGGTTACCTGAGAAGGAAGACGAGAAAGACGATGAAATGGGAGAGGGAGAAGAGAGGAAAGAAGAGTGGAGTAGGC CGGAGCGAGACACGGCGGCGGTGATGGAGAAATTTCTTTTGAGGGAGAGAGAAGCGGTGGCGGCGATACGAGAAGGAGGTTGA
AA sequence Show only first row Show all	>Lus10000989 pacid=23162258 polypeptide=Lus10000989 locus=Lus10000989.g ID=Lus10000989.BGIv1.0 annot-version=v1.0 MADGWLGPSSSIAKTASSSLLLRSPNVPLRSISMAATVSQTQFPANSSSTVSSPRPTQPSLFVFSGGTAFNGVVEELQKLTTRVAHVLPVSDDGGSTAEI VRVLGGPAVGDIRSRCLRLSDQSTVEALAVRKLLGHRLPLDAQEAKSEWYSIVEGEHGLWNGLSRPYSETIRAFLVYFQNEDGTIMRGQNEISHPTIGSM QLIDKGCCSALPSRIKRVFYMSSEGGNSLHEVFPSVNATVLDQLTKVDCVVYAMGSLFTSICPSLVLLLNGTLDRETIGFSASCFVTAITDALNRRYGDP HNCLENPAKNLTTFITSALQNRPPGGGLHPSPESVSSRQRLTRPVPFSKAKRRLPSSHHKPSTAAVSPIAAGVKISNSERQTYSDWGGKSGYELGNADGI RKVYDEFDGLPEKEDEKDDEMGEGEERKEEWSRPERDTAAVMEKFLLREREAVAAIREGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	1.0	0.9349
					Lus10033476 [exp]	1.4	0.9299
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10018248 [exp]	1.7	0.9029
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	2.2	0.8957
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	2.4	0.8954
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	4.6	0.8917
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	5.3	0.9016
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	6.2	0.8439
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10001208 [exp]	6.3	0.8409
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	6.6	0.8818

Compare expression of checked genes

Lus10000989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.