Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31130 70 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013926 [exp] 531 / 0 AT2G31130 68 / 1e-12 unknown protein Lus10033615 [exp] 67 / 2e-12 AT2G31130 101 / 2e-23 unknown protein Lus10017672 [exp] 66 / 1e-11 AT2G31130 100 / 4e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G376800 [exp] 67 / 3e-12 AT1G17780 82 / 3e-17 unknown protein Potri.004G055300 [exp] 66 / 4e-12 AT2G31130 66 / 5e-12 unknown protein Potri.019G089900 [exp] 66 / 9e-12 AT2G31130 84 / 1e-17 unknown protein Potri.011G065100 [exp] 62 / 1e-10 AT2G31130 63 / 8e-11 unknown protein Potri.013G118000 [exp] 60 / 7e-10 AT2G31130 85 / 8e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000990 pacid=23162250 polypeptide=Lus10000990 locus=Lus10000990.g ID=Lus10000990.BGIv1.0 annot-version=v1.0 ATGATGATCCCCCCATCACTATACATCTGTCCTGAGTTTATCAAAGTTTTCGAGGCGAAAGTCTTCAAGATGATCGATGACGAAGCGACTGTGTCTTGGG TTGGAGGTATATACAGAAAGCTTGAAGCTTTGTGTTTGGAAGCTGATGATCTGGTGCGACAGGAAGCACACGAGTTCATCGAAAACCATCTACAACCAGT GGGTTCGAATGTCAAGCAGTTCTACTCGGAGCTCGTTCGAGACATGCTTCCTCCTCAGTCCATGCCTGATGGATCGACAGAGATAGAACAGCATGATCTG GTGTTGAAGGAAACTAGTGATTCGTTCACGAACGTGAGCTTCGAGGTATCTGATGAGAAGAAGCAACTTGAAGAGCAGAGGTATCAAGGTAAATCAGAGG TCACACAAACTGTTGATATTCTGGTCAATGGGGAATCCAACCCGACCTCCGAAGATAACGAAAGATCTGATGATGACATGTACACGCCAGCAACCTCTGA CGATGTATCAGAGAGTATCTCATCCTTGGACGTTCAGTCGCTAGTATCTGTCGAGCTTGGGAACTCTAACGAAGACGAAGCCTTGAATGTTGACCATGTT CAAGGCAATGGTCCTTGTGAACAAATCACTGCAGGAAACTCCAATTTGAGTTCGATATCTGGAAATCCAGCCAAGCTCGACGAAAGCTGCATTCTTGTGA ACAATGATGACGAGGAGTATGTCCTTTCGCTTCGCGAGAAAAGACGCTGGTGTTACAAGAAAAACTGGAAGCAGAAAGTTTTGGCCTTGGCATCAAAGTC CTTGAAGCAGAAGCAAAGCCAAAGCCTTTGTCCTTCTGCAGTAGCTAGTGTGGAAACTAGAGAACACGAAGAACCTGCATTTTCGCTGTCGATTGCAGAC AAGGAGAACTGTGATTCCGACTGGGAGATCGTCTAG
AA sequence Show only first row Show all	>Lus10000990 pacid=23162250 polypeptide=Lus10000990 locus=Lus10000990.g ID=Lus10000990.BGIv1.0 annot-version=v1.0 MMIPPSLYICPEFIKVFEAKVFKMIDDEATVSWVGGIYRKLEALCLEADDLVRQEAHEFIENHLQPVGSNVKQFYSELVRDMLPPQSMPDGSTEIEQHDL VLKETSDSFTNVSFEVSDEKKQLEEQRYQGKSEVTQTVDILVNGESNPTSEDNERSDDDMYTPATSDDVSESISSLDVQSLVSVELGNSNEDEALNVDHV QGNGPCEQITAGNSNLSSISGNPAKLDESCILVNNDDEEYVLSLREKRRWCYKKNWKQKVLALASKSLKQKQSQSLCPSAVASVETREHEEPAFSLSIAD KENCDSDWEIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31130			unknown protein		Lus10000990 [exp]	0	1
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	2.2	0.9001
AT2G31130			unknown protein		Lus10013926 [exp]	3.2	0.8482
AT2G32760			unknown protein		Lus10037826 [exp]	3.5	0.8769
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035404 [exp]	4.4	0.8341
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013996 [exp]	4.6	0.8677
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	9.2	0.8615
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	11.5	0.8642
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	18.3	0.8307
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	18.7	0.8227
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	20.0	0.8509

Compare expression of checked genes

Lus10000990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.