Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 504 / 1e-176 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 496 / 4e-173 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 479 / 2e-166 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 475 / 5e-165 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 469 / 1e-162 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 466 / 3e-161 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59590 221 / 2e-66 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46660 219 / 6e-66 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G59580 218 / 3e-65 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46670 216 / 8e-65 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013924 [exp] 607 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 583 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013922 [exp] 577 / 0 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013923 [exp] 576 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013920 [exp] 539 / 0 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039277 [exp] 531 / 0 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 500 / 2e-174 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10024583 [exp] 497 / 1e-173 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 493 / 6e-172 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 557 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 553 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 545 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 534 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 531 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 517 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 514 / 2e-180 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 510 / 8e-179 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 509 / 3e-178 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 506 / 4e-177 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10000993 pacid=23162253 polypeptide=Lus10000993 locus=Lus10000993.g ID=Lus10000993.BGIv1.0 annot-version=v1.0 ATGAGTCATGTCGTTGCTGCCACCGCAGACCCTCCACACGTTGTATGCGTCCCATATCCAGCGCAGGGCCACATCAACCCGATGCTCCACGTGGCAAAGC TCCTCCATTCTCGTGGCTTTCACATCACCTTTGTCAACACCGAGTACAACCACAAGCGTCTCCTCAAAACTCGAGGCGACGCATTCTTTGACTCCTTACC TCCTGACTTCAACTTCGACAGTATTCCCGATGGCCTAAAGCCGGACAACAACATCGATGCCACCCAGGACATTCCTTCGCTGTGCGACACTACCGCAAAG AACTGTCTGGTCCCGTTTCGGGACCTCGTCCTCAGGCTAAACAACAACGTCGTTTTACCTGTGGTTAACTGTATTGTGTCGGATAGTTCGATGACGTTTA CTCTGGATGTAGCAAAGGAGTTTGGAATTCCTAACGTGCTCTTGGCCGTTCCGGGTGCGTGTGGGGTCTTGGGATACCACAGCTTCCCACTTCTGGTCCA TAAAGGTTTGGTGCCTCTCAAAGATTCTAGCTGCCTGACGAACGGATATCTCGAAACTGCGGTAGATTTCATTCCAGGGCTGAACAAAAACATGCGCCTG AAAGATTTCCCAACTTTCATAAGAACCACAGACCCAAACGACATGATGTTCAAGTACGTACTGGAGACTAATCCACGAGGTCGCGAGGGATCCGCGGTAC TTTTCAACACATTCGATCTGTTCGAACATGAATGTCTAGCTGCTCTCTCGACGACTCTCCCCAATGTTTTACCCATCGGTCCGCTCAACTTACTGACCAA CCAACCAACAACCAAAGGAGGAGACAAACTGATGAAGAATCTCAGCACTAGTCTATGGACAGAACAACCATACTGCCTGGATTGGCTCGACTCGAAAGAA CCCATCTCTGTATTGTACGTGAATTTCGGGAGCATCACTGTTTTGACACCCGATCAGCTCAAAGAATTCGCATGGGGCCTTGCGAAAAGCGGGACGCCCT TCTTGTGGGTGGTCAGGCCGGATCTCGTAGTAGGTGATGCGGCAATCCTGCCTAGTGAGTTTGTGGAAGAGACCAAAGACATAGGTCTGTTGGTAGGGTG GTGTGCACAAGAACAAGTTTTGCAACATCCTTCGGTCGGAGGGTTCCTGAGTCATATGGGGTGGAATTCGACGCTGGAGAGCTTGTCTTATGGTGTGCCG ATGATTTGTTGGCCGTTCTTTGCGGATCAACAGACGAGTTGCTTCTATGCCTGTGAGGAATGGGGGGTCGGGATGGAGATCGACCCTGAAGTGAAGAGGG AAGAAGTTGAGAAGCTTGTGAAGGAGTTGATGGGTGGGGAGAAAGGTAAAGAAATGAAAAGGAAAGCTATGGAGTGGAAAGTGAAAGCAGAGGAAGCTGC TCAACCCGGTGGATCGTCGTTTCGAAACGTTGATAGGTTTATAGAAGTGCTGTTACAAAACAATTAG
AA sequence Show only first row Show all	>Lus10000993 pacid=23162253 polypeptide=Lus10000993 locus=Lus10000993.g ID=Lus10000993.BGIv1.0 annot-version=v1.0 MSHVVAATADPPHVVCVPYPAQGHINPMLHVAKLLHSRGFHITFVNTEYNHKRLLKTRGDAFFDSLPPDFNFDSIPDGLKPDNNIDATQDIPSLCDTTAK NCLVPFRDLVLRLNNNVVLPVVNCIVSDSSMTFTLDVAKEFGIPNVLLAVPGACGVLGYHSFPLLVHKGLVPLKDSSCLTNGYLETAVDFIPGLNKNMRL KDFPTFIRTTDPNDMMFKYVLETNPRGREGSAVLFNTFDLFEHECLAALSTTLPNVLPIGPLNLLTNQPTTKGGDKLMKNLSTSLWTEQPYCLDWLDSKE PISVLYVNFGSITVLTPDQLKEFAWGLAKSGTPFLWVVRPDLVVGDAAILPSEFVEETKDIGLLVGWCAQEQVLQHPSVGGFLSHMGWNSTLESLSYGVP MICWPFFADQQTSCFYACEEWGVGMEIDPEVKREEVEKLVKELMGGEKGKEMKRKAMEWKVKAEEAAQPGGSSFRNVDRFIEVLLQNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10000993 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	12.6	0.9057
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	18.8	0.8873
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	26.0	0.8841
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	27.0	0.8856
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016318 [exp]	31.2	0.8391
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10010940 [exp]	32.6	0.8826
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	34.1	0.8799
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	38.8	0.8746
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	41.5	0.8746
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	41.9	0.8788

Compare expression of checked genes

Lus10000993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.