Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17615 173 / 6e-55 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 169 / 2e-53 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G26570 110 / 3e-30 ATCBL3 calcineurin B-like 3 (.1.2) AT5G55990 108 / 1e-29 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G33000 108 / 3e-29 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT5G24270 100 / 2e-26 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G16350 99 / 9e-26 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT1G64480 95 / 2e-24 CBL8 calcineurin B-like protein 8 (.1) AT4G26560 93 / 1e-23 CBL7 calcineurin B-like protein 7 (.1) AT4G01420 73 / 4e-16 CBL5 calcineurin B-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011028 [exp] 218 / 1e-72 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10022407 [exp] 129 / 1e-37 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10015630 [exp] 107 / 8e-29 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 107 / 9e-29 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10003191 [exp] 102 / 2e-27 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10001816 [exp] 102 / 4e-27 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10018108 [exp] 101 / 5e-27 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10023069 [exp] 101 / 6e-27 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10038764 [exp] 99 / 4e-26 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G084200 [exp] 149 / 1e-45 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 145 / 6e-44 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.001G371700 [exp] 113 / 2e-31 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.016G003500 [exp] 113 / 2e-31 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 113 / 2e-31 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.006G002900 [exp] 112 / 4e-31 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.006G230200 [exp] 107 / 1e-28 AT4G33000 271 / 4e-92 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.003G037800 [exp] 106 / 1e-28 AT4G33000 286 / 5e-98 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.003G141400 [exp] 105 / 4e-28 AT5G24270 238 / 8e-80 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.012G015100 [exp] 99 / 4e-26 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000995 pacid=23182462 polypeptide=Lus10000995 locus=Lus10000995.g ID=Lus10000995.BGIv1.0 annot-version=v1.0 ATGGGCTGTTTTAGTTCCAAGGTTATTAGGAAGTTCCCAGGACACGAGGATCCGATCGCCCTTGCTTCTCAAACAGCCTTCAGTGTGAGTGAAGTTGAAG CACTGTTTGAATTGTTCAAGAGCATTAGCAGTTCCGTTATTGACGATGGGTTGATCAGCAAGAACACGGGATATATCGAGCGACCCGAGGTTAAGCAGAT GTTGATTGCGCTTCTCGGTGAATCCGAAATGAAGTTGACAGACGAAACCATTGAAATCATTCTTGACAAGACATTCATGGAAGCTGATAACAACAATGAT GGCAAGATCGACAAGGGCGAATGGCATAGCTTCGTCTTCAAGAATCCATCTCTGCTAAAGATCATGACACTTCCCTACTTGAGGTACGAGCGGAACTCGA ATCGGCTTCTGTTTTTGATTAAACCGAACAGAATGTTTACTCATATCAGCGTGTTTACTCGAACCAAATGCAGGGACATCACTACCACATTTCCAAGTTT TGTTTTCAACTCAGAGGTGGATGAGATGGCAACCTAA
AA sequence Show only first row Show all	>Lus10000995 pacid=23182462 polypeptide=Lus10000995 locus=Lus10000995.g ID=Lus10000995.BGIv1.0 annot-version=v1.0 MGCFSSKVIRKFPGHEDPIALASQTAFSVSEVEALFELFKSISSSVIDDGLISKNTGYIERPEVKQMLIALLGESEMKLTDETIEIILDKTFMEADNNND GKIDKGEWHSFVFKNPSLLKIMTLPYLRYERNSNRLLFLIKPNRMFTHISVFTRTKCRDITTTFPSFVFNSEVDEMAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10000995 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006570 [exp]	2.0	0.8788
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023212 [exp]	13.1	0.8425
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	13.4	0.8360
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	13.9	0.8688
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	14.8	0.7996
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	17.1	0.8426
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10037102 [exp]	18.1	0.8012
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10042324 [exp]	21.6	0.8244
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008216 [exp]	24.4	0.7850
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	27.1	0.8394

Compare expression of checked genes

Lus10000995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.