Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01960 521 / 0 RING/U-box superfamily protein (.1) AT1G65040 62 / 2e-10 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G16090 61 / 1e-09 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT2G42350 55 / 2e-08 RING/U-box superfamily protein (.1) AT1G18780 52 / 3e-07 RING/U-box superfamily protein (.1) AT2G28920 49 / 6e-07 RING/U-box superfamily protein (.1) AT1G18770 48 / 6e-07 RING/U-box superfamily protein (.1) AT2G20030 52 / 7e-07 RING/U-box superfamily protein (.1) AT2G42360 50 / 8e-07 RING/U-box superfamily protein (.1) AT3G30460 49 / 9e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011027 [exp] 691 / 0 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10040359 [exp] 60 / 2e-09 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 60 / 2e-09 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023617 [exp] 54 / 1e-07 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10034953 [exp] 54 / 2e-07 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 53 / 3e-07 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10020007 [exp] 51 / 1e-06 AT2G26350 449 / 2e-158 peroxin 10 (.1) Lus10028773 [exp] 49 / 1e-06 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10011390 [exp] 49 / 2e-06 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111800 [exp] 539 / 0 AT5G01960 572 / 0.0 RING/U-box superfamily protein (.1) Potri.016G141200 [exp] 531 / 0 AT5G01960 546 / 0.0 RING/U-box superfamily protein (.1) Potri.013G160000 [exp] 429 / 1e-147 AT5G01960 545 / 0.0 RING/U-box superfamily protein (.1) Potri.019G132201 [exp] 340 / 2e-113 AT5G01960 377 / 2e-128 RING/U-box superfamily protein (.1) Potri.013G088400 [exp] 65 / 6e-11 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.019G051500 [exp] 62 / 4e-10 AT3G16090 661 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 58 / 7e-09 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 54 / 9e-08 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 53 / 2e-07 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 53 / 3e-07 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10000996 pacid=23182453 polypeptide=Lus10000996 locus=Lus10000996.g ID=Lus10000996.BGIv1.0 annot-version=v1.0 ATGGAAACCTCCGGCGCCGGAAATTCCGACCTCTTCAGACCGCCACCATCGTCTTCAGGCGGAGGATTAGCTACCAATTCCCGCAGCAGCAACAGCAGCG GAGGAGGAGGAGGACTCACGGCTGCTTCCATAATCCAGGCTCCTATCTCTGCTCTCCTCGAGTACTCCGGCCTCCTCCGGCCTTCTAGGTCATCATCCTA CTCCGATTCTTCTTCTTCTTCATCATCATCGGGTGATCATCTCATCTCTCACGATCTTCCTCCGGCCGCAAACAGCGGCAACGGAGAGGTTTCTATTCGG ATTATAGGCGCCGCCGAAGATTCTGACCGAGGCCAGCAGCTTAGGATCGCCTCCGACGGAGAGAGTCATGATTCTGGACCTGATCGCGAGGTTTCTAGCG CTCCTGCTGCTCAGTCTTCTTCTAACCCTAGCTCGGCCGCGGAAGACGGAGGAGAAGCGAACAGTGATGGTAATGGTAATGGTGGAGCTAACGGGGGAAG TAATGGAAGGGATTCTACTTACCAGAGATATGATATTCAGCAGGCTGCTAGGTGGATTGAGCAAGTTCTTCCGTTCTCTTTGCTTCTCTTGGTTGTCTTC ATCCGCCAGCACTTGCAAGGCTTCTTTGTCACCATTTGGATTGCTGTGGTGATGTTCAAATCGAATGATATTCTTCGCAAACAAACGGCTCTTAAGGGCG AGAGGAAAATGTCTGTTCTAGTTGGGATTTCAGTGGCATTTGCAGTTCATGTTGTTGGGGTTTATTGGTGGTATCAGAACGACGATCTTCTCTACCCTTT AGTTATGCTCCCACCAAAGGCTATACCACCTTTTTGGCATGCTGTTTTCATCATCATGGTCAACGATACTCTGGTGAGGCAGGCAGCAATGGTGATCAAA TGCATTCTTCTGATGTATTACAGGAATAGTAGAGGCAGAAATTATCGTCGGCAGGGTCAAATGCTAACTTTAATTGAATATTTGATGCTCCTGTATCGTG CACTGCTGCCTACACCAGTGTGGTATCGCTTCTTTTTGAACAAGGAATATGGTAGCCTCTTTTCCTCTTTGATGACAGGGCTTTACTTGACTTTCAAGCT AACCTCTGTTGTCGAAAAGGTTCAATCATTCTTTGCTGCTCTGAAGGCATTGTCACGCAAAGAGGTGAATTATGGTGCTTATGCAACATCTGAGCAGGTG AACGCTGCTGGAGATTTGTGCGCGATATGCCAGGAGAAGATGCACGCCCCGATCCTACTCCGCTGTAAACACATTTTTTGCGAGGATTGCGTTTCCGAAT GGTTCGAAAGGGAGAGGACGTGCCCGTTGTGCAGGGCGCAGGTGAAACCTGCCGATCTCCGGTCGTTCGGGGACGGTTCAACCAGTTTGTTCTTTCAGGT ATTCTAA
AA sequence Show only first row Show all	>Lus10000996 pacid=23182453 polypeptide=Lus10000996 locus=Lus10000996.g ID=Lus10000996.BGIv1.0 annot-version=v1.0 METSGAGNSDLFRPPPSSSGGGLATNSRSSNSSGGGGGLTAASIIQAPISALLEYSGLLRPSRSSSYSDSSSSSSSSGDHLISHDLPPAANSGNGEVSIR IIGAAEDSDRGQQLRIASDGESHDSGPDREVSSAPAAQSSSNPSSAAEDGGEANSDGNGNGGANGGSNGRDSTYQRYDIQQAARWIEQVLPFSLLLLVVF IRQHLQGFFVTIWIAVVMFKSNDILRKQTALKGERKMSVLVGISVAFAVHVVGVYWWYQNDDLLYPLVMLPPKAIPPFWHAVFIIMVNDTLVRQAAMVIK CILLMYYRNSRGRNYRRQGQMLTLIEYLMLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAALKALSRKEVNYGAYATSEQV NAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRAQVKPADLRSFGDGSTSLFFQVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01960			RING/U-box superfamily protein...		Lus10000996 [exp]	0	1
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	6.5	0.8614
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	6.8	0.8646
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	7.3	0.8702
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	10.0	0.8563
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10022592 [exp]	10.5	0.8252
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	12.0	0.8466
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	15.0	0.8385
AT3G06140			RING/U-box superfamily protein...		Lus10004419 [exp]	15.1	0.7683
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	15.9	0.8351
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	22.0	0.8160

Compare expression of checked genes

Lus10000996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.