Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15080 308 / 1e-105 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G27970 107 / 1e-26 Exonuclease family protein (.1) AT5G40310 104 / 6e-26 C2H2ZnF Exonuclease family protein (.1) AT2G48100 100 / 3e-24 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT3G50100 89 / 4e-20 SDN1 small RNA degrading nuclease 1 (.1) AT5G67240 86 / 1e-18 SDN3 small RNA degrading nuclease 3 (.1.2) AT5G05540 82 / 2e-17 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G25800 75 / 5e-15 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50090 63 / 2e-11 Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011026 [exp] 376 / 7e-133 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008787 [exp] 103 / 2e-25 AT3G27970 583 / 0.0 Exonuclease family protein (.1) Lus10022230 [exp] 100 / 2e-24 AT3G27970 585 / 0.0 Exonuclease family protein (.1) Lus10029642 [exp] 97 / 7e-23 AT2G48100 382 / 3e-132 Exonuclease family protein (.1.2.3.4) Lus10042687 [exp] 88 / 1e-19 AT2G48100 362 / 2e-124 Exonuclease family protein (.1.2.3.4) Lus10019321 [exp] 82 / 2e-17 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 77 / 1e-15 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10018935 [exp] 76 / 3e-15 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10028637 [exp] 74 / 9e-15 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373500 [exp] 323 / 2e-111 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G215700 [exp] 103 / 2e-25 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.017G073300 [exp] 97 / 6e-23 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.005G186600 [exp] 77 / 2e-15 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 71 / 9e-14 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10000997 pacid=23182454 polypeptide=Lus10000997 locus=Lus10000997.g ID=Lus10000997.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAGTATCAGCAGCTGGAAAAGAAGAAGATGAAGGTAAAGAAGAACCCTAATAAGAAGCAACAGCTTCCCGCGGCGCCGCTCAATCCCAACT GGGCTCAACTCCAGCAGAAGCTGAACTCCCGACCTAGCTCGAAGCCTTCAACACGGCCCTCAGAGCTTCTCGTTTTAGGAAAGCGGAAAGAGAGGTCTGA CGAGGAGCGAGCTGAGGATCCTCAGCCGAGTCCTCTTGTGCCTGCCAATAGCGATTCCAGTTTGACAGATGCTCTCGCCATGGACTGTGAAATGGTTGGT GTTGGTCAAGCAAACCGAAGTGCCCTTGGACGCGTTACACTGGTAAATAAGTGGGGAAACGTTGTATACGACGAATTTGTTCGTCCCATGGAGGCTGTTG TTGACTTCCGCACACATATTAGTGGAATTCGTCCCAAGGACTTAAAACAAGCGAAGAAATTTCCAGTTGTGCAGAAGAAAGTGGCCGAGTTGATAAAGGG AAGGATTCTTGTTGGTCATGCCCTGTCCAATGATTTTAAGGTATTGCTATTGAATCATCCAAAGAAGGACCTTCGTGATTCTTCCGAGTACCCGCCTTTT CTCAAGGAACACCGCAGAAAATCGCTTAAGCATCTTGCGTCCGAGTTCCTCGGGATCGAAATACAAAATGGAGAACACTGCCCTGTTGAAGATGCGCGGG CAGCTATGGTACTCTACCAGAAGAACGTGAAAGAGTGGGAGAAGTTTGCGAAATCTCAAGCTAGGTTGAATCGAAAGCAGCAGAACAATCGCAGGCCGAA AAAGAAACGAAAGATCTACAATGATATCAATCATCCAACGGTGTAG
AA sequence Show only first row Show all	>Lus10000997 pacid=23182454 polypeptide=Lus10000997 locus=Lus10000997.g ID=Lus10000997.BGIv1.0 annot-version=v1.0 MEEQYQQLEKKKMKVKKNPNKKQQLPAAPLNPNWAQLQQKLNSRPSSKPSTRPSELLVLGKRKERSDEERAEDPQPSPLVPANSDSSLTDALAMDCEMVG VGQANRSALGRVTLVNKWGNVVYDEFVRPMEAVVDFRTHISGIRPKDLKQAKKFPVVQKKVAELIKGRILVGHALSNDFKVLLLNHPKKDLRDSSEYPPF LKEHRRKSLKHLASEFLGIEIQNGEHCPVEDARAAMVLYQKNVKEWEKFAKSQARLNRKQQNNRRPKKKRKIYNDINHPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	5.7	0.8407
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	6.3	0.8530
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	11.3	0.7950
AT3G17900			unknown protein		Lus10013273 [exp]	12.0	0.8101
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	12.4	0.8060
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	13.0	0.8049
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10015979 [exp]	14.4	0.8042
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	15.2	0.8143
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	15.5	0.7959
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	17.1	0.8008

Compare expression of checked genes

Lus10000997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.