Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41150 865 / 0 ATRAD1, UVH1 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011024 [exp] 1261 / 0 AT5G41150 1233 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150400 [exp] 928 / 0 AT5G41150 1188 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF02732 [flax] [poplar] ERCC4 ERCC4 domain
Representative CDS sequence Show only first row Show all	>Lus10000998 pacid=23182464 polypeptide=Lus10000998 locus=Lus10000998.g ID=Lus10000998.BGIv1.0 annot-version=v1.0 ATGAGTAAGTACATGATCGGAATACAGAAGGCGATCATCGAAGTGTTGGACGCTTGCCTGAAGGAGATGAGGAAGACGAATAAGGTCGATGTTGAGGATT TGACAGTAGAGAATGGACTGTTCAAATCGTTTGATGAGATTGTGAAGAGGCAGTTGGATCCCATTTGGCATACATTGGGGAAGAAGACTAAACAGCTCGT CTCTGATTTGAAAACCTTGAGGAAGTTGCTTGATTATCTCGTCAGGTATGATGCTGTGAGTTACTTGAAGTATTTGGATACACTGAGGGTGTCGGAGAGC TTTCGATCGGTCTGGATATTTGCAGAGTCGAGCTATAAGATATTCGATTATGCCAAGAGGCGAGTGTATAGGTTCACTGGGGAGCAGTTGAAAGCATTTC TTGCTAAACGGAGGAAATTGAGTAAGGATGGAACTGATAAAGAAGAAGTTGATGCTTCCTCGACAAGTACGAGCAATGGAGTTGCGTTGGAGGAAGTTCT CGAGGAAGCTCCGAAGTGGAAGGTTTTACGTGAGATACTCGAAGAGATTGAGGACGAAAGAACAACTAAGCAAGAACAAACTCTGCTGAGACCGACGAGT TGGATAGTGGAATCGTTCTACTGGCTTGCAAAGACGAACGCTCTTGTGATGCAAGAAGAGTGGAAGAACTATCTGCTGAGCAAAGTGGACTTGCGAGGCT TACAAACGCCGCAAAAGAGGAAGCAGCCAAAGGAGCCTAAAGGAGTTGGAATTCTTGATGGAGTTGTTCCAGTAACGATTTCCCAGAAAACAGAACCTAG CAGCATTAACAAGCAGGAGCATGATGCCTTGATAGCAGCAGTTTTGCAGATACGAAAGGAGCAGCAACGCAATGTCGTAGACGAGAAGAAGCAACCTCCG ATCCAGAGTAGTAATAAAAAGAGGAAGGGAAAGCAGAAGAAGAAAACAGACCAACCTGAAATCTCGAATCCTGAAGTTGAGAACAGTTCGGTTCGAGGTG CTTCGATGCAAGGAGGAGCTCTTCGAAGGCACCAAAGCGAGGATCCTAACCCGAAAAAATCGGAGACGACTGCGAAGAGAATCCCGCCTTTGTATTTCTA TGCTATGGAAAGGGACGAGCCGATACTCGACATGCTCAAGCCATCTGTGATCGTTGTTTACCATCCGGACACGACATTCGTTCGAGAGATTGAAGTCTAC AAAGCTGAGAATCCATCAAAGGTAGTGAAAGTGTATTTCCTATTCTATGAAGCTTCGACCGAGGTCCAGAAGTTTGATGCCGGCATACGTAGGGAGAATG GAGCCTTTGAAACGCTGATTAGGCAGAAATCCATGATGATGATTCCAGTTGATCAGTACGGACACTGTGTGGGATTGAATTCGTACGCAGAACTTGAGGG TTCGAGTTCCCAGAACTCGGTAACTCGAAAGGCTGGCGGAAGGAAAGATCCTGAGAAAGAAATGCGGATCATAGTGGACATGAGGGAGTTCATGAGTAGC CTTCCCAATGTTCTTCACCAGAAAGGCATGCGCATTACGCCTGTCACATTGGAAGTCGGAGACTACATCCTCTCTCCCTTGATCTGCGTCGAGAGGAAGA GTATTCAAGACCTCTTTGGCAGCTTTGCCTCCGGCAGACTGTACAACCAGGCTGAGATGATGGTACGGTACTACAGAATCCCCGTCCTCCTGATTGAGTT TTCGCAGGATAAGAGCTTCTCGTTCCAGTCAGCAGGTGACATTGGAGACGATGTCACACCCTACAGTGTTATATCGAAGCTATCATTGCTCGCCTTGCAT TTACCCCGGCTACGAATCATATGGTCTCGAAGCCTACACGCGACCGCAGAGATATTCGCGTCTCTGAAGGCGAATCAGGACGAGCCTGAACTCGACAAGG CCGTTCGGGTCGGTGTCCCTTCGGAGGAAGGCATTGTCGAAAACGATACGAGAGCTGAGAACTACAACACCTCAGCAGTCGAGTTCCTGAGGCGCCTTCC GGGGGTGACCGATTCGAACTACCGATCGATCATGGACGGGTGTAAGAGCTTGTCCGAACTAGCTCTAATGCCTGTCGAAAGGCTGGCTGAGCTAATGGGC GGGCAGAAAGCTGCTCGTACCCTCAGGGAATTCCTCGACGCGAAGTATCCTACTTTGTTATAG
AA sequence Show only first row Show all	>Lus10000998 pacid=23182464 polypeptide=Lus10000998 locus=Lus10000998.g ID=Lus10000998.BGIv1.0 annot-version=v1.0 MSKYMIGIQKAIIEVLDACLKEMRKTNKVDVEDLTVENGLFKSFDEIVKRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVSYLKYLDTLRVSES FRSVWIFAESSYKIFDYAKRRVYRFTGEQLKAFLAKRRKLSKDGTDKEEVDASSTSTSNGVALEEVLEEAPKWKVLREILEEIEDERTTKQEQTLLRPTS WIVESFYWLAKTNALVMQEEWKNYLLSKVDLRGLQTPQKRKQPKEPKGVGILDGVVPVTISQKTEPSSINKQEHDALIAAVLQIRKEQQRNVVDEKKQPP IQSSNKKRKGKQKKKTDQPEISNPEVENSSVRGASMQGGALRRHQSEDPNPKKSETTAKRIPPLYFYAMERDEPILDMLKPSVIVVYHPDTTFVREIEVY KAENPSKVVKVYFLFYEASTEVQKFDAGIRRENGAFETLIRQKSMMMIPVDQYGHCVGLNSYAELEGSSSQNSVTRKAGGRKDPEKEMRIIVDMREFMSS LPNVLHQKGMRITPVTLEVGDYILSPLICVERKSIQDLFGSFASGRLYNQAEMMVRYYRIPVLLIEFSQDKSFSFQSAGDIGDDVTPYSVISKLSLLALH LPRLRIIWSRSLHATAEIFASLKANQDEPELDKAVRVGVPSEEGIVENDTRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLSELALMPVERLAELMG GQKAARTLREFLDAKYPTLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	0	1
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10029726 [exp]	2.0	0.6816
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	2.0	0.7585
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	5.5	0.7005
AT2G34050			unknown protein		Lus10007055 [exp]	9.8	0.5987
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10025826 [exp]	15.2	0.7057
AT4G37030			unknown protein		Lus10001003 [exp]	17.7	0.5874
AT1G03290			unknown protein		Lus10028006 [exp]	20.1	0.6795
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Lus10038862 [exp]	32.0	0.5669
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032608 [exp]	33.2	0.6141
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	70.0	0.5931

Compare expression of checked genes

Lus10000998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.