Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001000 [exp] 195 / 4e-65 ND / Lus10022857 [exp] 111 / 4e-32 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10000999 pacid=23182455 polypeptide=Lus10000999 locus=Lus10000999.g ID=Lus10000999.BGIv1.0 annot-version=v1.0 ATGGGTGGCGGCAACAACCTACCCAAAGCTCAACTCTCTCTCCTCTTCCTCCTCGCTGCCGCCTCCTTCCACCTCTCCGAGGCATCCCTGTCGTCCATAT TCAACCTCCACATTTTCCCCTTGGTTAACGTTACGTTCACCAACGAGGCCAACCACTCGGTCAACCTCGTATGCAGCGCGGAGCAGATTCGCGAGAAGGT CATCAGGTTGGGCCCGGGGGATGAGATCTCGTGGCAGGTACGCGATGTGTTGTTTCCGCTCGTTTGGTGCTACGTGGAGGTCAACGATGTCACGTGGGGG TTGTTCTGGGCGTACCAGGCTAAGCTGAGGTGCTTCTCGCATTGTGATTGGAGGATAAGGGAAGACGGAATGTGGCTTATTCGCCGGCATGATCATGAGG AGGATCAAATGTGGTTGAATGTCAATGGCGGAGGGTTCTGA
AA sequence Show only first row Show all	>Lus10000999 pacid=23182455 polypeptide=Lus10000999 locus=Lus10000999.g ID=Lus10000999.BGIv1.0 annot-version=v1.0 MGGGNNLPKAQLSLLFLLAAASFHLSEASLSSIFNLHIFPLVNVTFTNEANHSVNLVCSAEQIREKVIRLGPGDEISWQVRDVLFPLVWCYVEVNDVTWG LFWAYQAKLRCFSHCDWRIREDGMWLIRRHDHEEDQMWLNVNGGGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000999 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008823 [exp]	5.5	0.8522
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031281 [exp]	37.9	0.8308
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10016254 [exp]	41.2	0.8173
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10033239 [exp]	42.7	0.8293
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	42.8	0.8279
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	48.9	0.8225
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	76.3	0.8086
AT2G43630			unknown protein		Lus10002105 [exp]	87.1	0.8061
					Lus10031340 [exp]	102.9	0.7870
AT3G20898			unknown protein		Lus10040827 [exp]	104.1	0.7892

Compare expression of checked genes

Lus10000999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.