Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37190 541 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011023 [exp] 882 / 0 AT4G37190 646 / 0.0 unknown protein Lus10006097 [exp] 51 / 5e-07 AT4G29090 43 / 8e-05 Ribonuclease H-like superfamily protein (.1) Lus10033071 [exp] 52 / 6e-07 ND 39 / 0.005 Lus10033089 [exp] 45 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361900 [exp] 650 / 0 AT4G37190 682 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [flax] [poplar] Tubulin PF10644 [flax] [poplar] Misat_Tub_SegII Misato Segment II tubulin-like domain
Representative CDS sequence Show only first row Show all	>Lus10001001 pacid=23182468 polypeptide=Lus10001001 locus=Lus10001001.g ID=Lus10001001.BGIv1.0 annot-version=v1.0 ATGGCAATTCGAGAAGCACTATATGTAGCGTGTGTTCGATGCATCGACTTCTTTCACCTTTACTCATATTCCGCTGAATCTTTAAAATTGATCAACACCT CGTCCTTGGATATCCGTGTTGGACAGTTGCTACCTGAGTGTCGTAGCTTGCTCCACACGCTTCCCCTAGTCACCCTGCATCACGATGAGCTGCTTGGATT GGTTGATGATCCTGACAGTGATCCAGCCTTCTTGAATCATCAGCAGTATCTAAACATGGATGTCCTATTTCGTACTGGTGAAACCCAGAAGGGAGTCCCT ACGTATACTCCTCGCCTGGTGTCGATTGATTTGCAAGGATCCCTTGGTTCCTTGAGTTCACGTGGTTCATTGTACAATGAAGACTTATCTTCTTCATCTG CTGTTCCCACATGGAATGGTAGTGTTGTTACTTCTACATCCGAAGTGCACCAGAGGAACCTATTCTTGGAAAGTCTGTACCAAAGTGATAGCAAAGGAGA AACCAGCGATAAGGAAATTGTTGAATCGTTGGAAAACAGTGTCCAGTTTTGGACTGATTTTTCGAAAGTGCACTATCATCCCCGCAGTTTATATGAACTG AGCGGGTTGTGGGTGAATTCTCTGGAGTTTGACAATTACGGCATTGGGAGAGATGTGTATTCTGAAGGTTTGCGAGGAGAAGAAATCAGCGAGAAGCTTC GTTGTTTTACAGAAGAGAGTGACCATATTCAGGGTTTCCAATTCATTGCTGATGATTCAGGAGGGTTTTCTGCTCTATCTGCTGATCTTTTGGAGCACAT TGCAGATGATTACCCATATATACCTATTCTACTCTATACCGTCAGGGCTCCTTCCTCTCCTACAAACAGGAAGCAAACAGTTTCGAGGAATATCCACGAC GCCGTTTCTTTCTCGAGGCTTTCGTTCCTCTCCAAACTAATTGTTCCTCTCGGTCTACCATCTTTGAGCACAAGCAAAGCTTGCAAATTTCTCCACGTTA AAGACGAGAAGCCTTACCATACAAGTGCAGTCTACGCCGCGGCTATACACTCAATCAGCCTTCCATTCAGAATGGATACGCTCGGTCCAACCGCCGGTTC ATCTTATGCTTCCGGAGCTATGGATGTTAACGGCGTTATACAAATGCTAGCCGGGCAAGCTAGGCAAAACCTTGTGGCTATTCTTGACACTGCAATTCCT GCACCTCCTTTAACCGGAAATCTGGTTCAGCCATCATTTCTTGCGAATTTGGAGTCGTTGACCCCTGAGATATCAGATGATGCTGAAGATTTCCACGCCG TTGAATCCATGGTTGTCCATGGAGCACTCGGATCAGGAAACCACAGAGCTTCAGTTTCAGAAGTAACCGATGCAATAAGCGCAGCATACGAGACACTATC GACAAGGCCGATGTTCAGCCACCTCTCGACTGCTCGCTGTCCTCTTCCGATACCGTTGCCATTCCCTTCGATTTTCGGACCCCTTCTTGGTACACAAGGA GAGCTCCTAACCAATTCAACGAGACCATTGTGCTCTTCATCACTCGAGGTCAACTCCGTCCCCATGGCAGCTAGGCTACGATCGAGCACAGCCATCTTAC CGTACTTGGAGAACAGACTGGTAAACCTTCGAAAGCTCGGCATCGCACGTGGAGCTCCGGGAGGCGAGATCGTTCGGAGCTGGGGGTTCGGGAAAGATGA ACTGGAAGACATGGAGCAGAACTTGTCCAAGATGGTAGCAAAGTTGATGGATGCTAATTCTCAGTCCGAGGATGAGTCGGATTAG
AA sequence Show only first row Show all	>Lus10001001 pacid=23182468 polypeptide=Lus10001001 locus=Lus10001001.g ID=Lus10001001.BGIv1.0 annot-version=v1.0 MAIREALYVACVRCIDFFHLYSYSAESLKLINTSSLDIRVGQLLPECRSLLHTLPLVTLHHDELLGLVDDPDSDPAFLNHQQYLNMDVLFRTGETQKGVP TYTPRLVSIDLQGSLGSLSSRGSLYNEDLSSSSAVPTWNGSVVTSTSEVHQRNLFLESLYQSDSKGETSDKEIVESLENSVQFWTDFSKVHYHPRSLYEL SGLWVNSLEFDNYGIGRDVYSEGLRGEEISEKLRCFTEESDHIQGFQFIADDSGGFSALSADLLEHIADDYPYIPILLYTVRAPSSPTNRKQTVSRNIHD AVSFSRLSFLSKLIVPLGLPSLSTSKACKFLHVKDEKPYHTSAVYAAAIHSISLPFRMDTLGPTAGSSYASGAMDVNGVIQMLAGQARQNLVAILDTAIP APPLTGNLVQPSFLANLESLTPEISDDAEDFHAVESMVVHGALGSGNHRASVSEVTDAISAAYETLSTRPMFSHLSTARCPLPIPLPFPSIFGPLLGTQG ELLTNSTRPLCSSSLEVNSVPMAARLRSSTAILPYLENRLVNLRKLGIARGAPGGEIVRSWGFGKDELEDMEQNLSKMVAKLMDANSQSEDESD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37190			unknown protein		Lus10001001 [exp]	0	1
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	3.0	0.8851
AT5G49560			Putative methyltransferase fam...		Lus10014309 [exp]	5.5	0.8880
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	7.7	0.8755
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	13.2	0.8590
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	13.3	0.8789
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	15.0	0.8905
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020117 [exp]	15.5	0.8704
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	16.7	0.8711
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10043379 [exp]	17.4	0.8624
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Lus10012932 [exp]	21.5	0.8341

Compare expression of checked genes

Lus10001001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.