Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33510 767 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) AT1G22410 753 / 0 Class-II DAHP synthetase family protein (.1) AT4G39980 744 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011022 [exp] 782 / 0 AT4G33510 658 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10000636 [exp] 741 / 0 AT4G39980 860 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10023152 [exp] 736 / 0 AT4G39980 847 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10025739 [exp] 729 / 0 AT4G39980 848 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10035923 [exp] 726 / 0 AT1G22410 840 / 0.0 Class-II DAHP synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150500 [exp] 832 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Potri.005G162800 [exp] 766 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.005G073300 [exp] 763 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.002G099200 [exp] 763 / 0 AT1G22410 845 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.007G095700 [exp] 701 / 0 AT4G39980 796 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01474 [flax] [poplar] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Lus10001002 pacid=23182466 polypeptide=Lus10001002 locus=Lus10001002.g ID=Lus10001002.BGIv1.0 annot-version=v1.0 ATGGCTCTCTCCACCGTCCTCAACCCAACCATTTCCCCCGCCGCATCATCGGCCTCCCTCACCACACCTCATCACTTCCCCTTCCGCCTCACCTCCATCG GCAGGAGGTCCCGATCCTCAGCCACCGTCGTCGTCTCGGTGTCGACGTCTTCGAAATCGGTTTCATCCGATTGGGCCGTGGACAGCTGGAGGTCGAAGCC TGCAGTGCAGCTCCCTGACTATCCGGACAAGGAGGAGCTGGAGTCGGTTCTGCAGACGCTGAGCACTTTCCCGCCAATCGTGTTCGCCGGAGAGGCGAGG TTGCTCGAGGAGAGGCTGGCGAATGCCGCCGTCGGGACCGCCTTCCTCCTGCAAGGAGGGGATTGTGCGGAGAGCTTCAAGGAGTATAACGCTAATAATA TTAGGGATACTTTCCGGGTTCTGCTTCAGATGGGCGTCGTTCTCACCTTCGGTGCTCAGATGCCTATCATCAAGGTGGGGAGAATGGCGGGGCAATTCGC GAAACCTAGGTCGGATTCCTTCGAGGAAAAGGACGGTGTGAAGCTCCCGAGTTACAGAGGAGATAACATCAACGGCGATGCATTTGATGAGAAGACTAGA AAGCCTGATCCTCAGAGACTCATCAGAGCTTACCTTCAGTCTGTTGGAACATTGAACCTTCTAAGAGCTTTCGCCACTGGTGGCTACGCTGCCATCCAGA GAGTTTCTCAGTGGAATCTCGATTTCGTGCAGCACAGCGAGCAAGGAGACAGGTACATGGAATTGGCGAGCAGGGTTGACGATGCCATTGGATTCATGAC TGCAGCTGGTCTTACCATTGAACATCCTGTGATGAACACCACCGATTTCTGGACGTCTCATGAGTGCCTTCACTTGCCTTACGAGCAGTCCATGACTAGG GAGGATTCGACCTCCGGTCTCTTCTATGATTGCTCGGCACACATGCTGTGGGTCGGTGAGAGGACTCGGCAGCTCGGTGGAGCTCATATCGAGTTTCTCC GAGGCATCTCCAACCCGTTGGGTATCAAGGTGAGCGACAAGATGGACCCGATCGAGCTTGTGAAGCTGTGCGAAATCCTTAACCCGCACAACAAACCTGG ACGACTAACGATCATTACAAGAATGGGAGCAGACAACATGAGAATAAAGCTGCCTCATCTAATCAGAGCTGTCCGACAAGCTGGGTTAATTGTCACCTGG GTCAGTGATCCTATGCATGGCAATACAATCAAGGCTCCGTGCGGCCTCAAGACTCGAGCATTTGATGCTATTCGGGCCGAGTTAAGGGCGTTCTTCGATG TGCACGACCAGGAAGGAAGCTACCCGGGAGGGGTCCACCTCGAAATGACTGGCCAGAACGTGACCGAGTGTGTCGGAGGGTCGAAGACCATAACTTTCGA CGACCTGAACTCGCGTTACCACACCCACTGCGACCCTAGGCTGAACGCTTCGCAGTCTCTTGAGCTAGCTTTCGCCATCTCCGAGAGGCTGAGGAAGAAG CGGCTTCGAGCCGGGAGGAGCAACCTCGGTGGTAACCGAAGCAAAGCTAGCGACCCTTTTGAATAA
AA sequence Show only first row Show all	>Lus10001002 pacid=23182466 polypeptide=Lus10001002 locus=Lus10001002.g ID=Lus10001002.BGIv1.0 annot-version=v1.0 MALSTVLNPTISPAASSASLTTPHHFPFRLTSIGRRSRSSATVVVSVSTSSKSVSSDWAVDSWRSKPAVQLPDYPDKEELESVLQTLSTFPPIVFAGEAR LLEERLANAAVGTAFLLQGGDCAESFKEYNANNIRDTFRVLLQMGVVLTFGAQMPIIKVGRMAGQFAKPRSDSFEEKDGVKLPSYRGDNINGDAFDEKTR KPDPQRLIRAYLQSVGTLNLLRAFATGGYAAIQRVSQWNLDFVQHSEQGDRYMELASRVDDAIGFMTAAGLTIEHPVMNTTDFWTSHECLHLPYEQSMTR EDSTSGLFYDCSAHMLWVGERTRQLGGAHIEFLRGISNPLGIKVSDKMDPIELVKLCEILNPHNKPGRLTIITRMGADNMRIKLPHLIRAVRQAGLIVTW VSDPMHGNTIKAPCGLKTRAFDAIRAELRAFFDVHDQEGSYPGGVHLEMTGQNVTECVGGSKTITFDDLNSRYHTHCDPRLNASQSLELAFAISERLRKK RLRAGRSNLGGNRSKASDPFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	0	1
					Lus10035449 [exp]	6.5	0.8002
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	7.7	0.8009
AT4G15010			Mitochondrial substrate carrie...		Lus10030299 [exp]	9.5	0.8270
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10018853 [exp]	10.0	0.7922
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10035155 [exp]	12.7	0.8494
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	14.0	0.7802
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	14.3	0.8207
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	19.2	0.7993
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	24.2	0.7519
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	24.2	0.8371

Compare expression of checked genes

Lus10001002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.