Plant FIBer expression Database

Lus10001003 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37030 597 / 0 unknown protein
AT4G12680 367 / 4e-120 unknown protein
AT5G40640 327 / 2e-104 unknown protein
AT3G27390 317 / 6e-101 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011021
[exp]
981 / 0 AT4G37030 698 / 0.0 unknown protein
Lus10016056
[exp]
355 / 3e-115 AT4G12680 749 / 0.0 unknown protein
Lus10025177
[exp]
338 / 2e-108 AT4G12680 738 / 0.0 unknown protein
Lus10032110
[exp]
335 / 1e-107 AT3G27390 728 / 0.0 unknown protein
Lus10014575
[exp]
326 / 4e-103 AT5G40640 714 / 0.0 unknown protein
Lus10022317
[exp]
309 / 7e-98 AT3G27390 722 / 0.0 unknown protein
Lus10014881
[exp]
166 / 6e-46 AT3G27390 380 / 3e-128 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G042400
[exp]
645 / 0 AT4G37030 707 / 0.0 unknown protein
Potri.007G035400
[exp]
324 / 6e-104 AT4G12680 411 / 9e-138 unknown protein
Potri.001G338900
[exp]
315 / 9e-100 AT5G40640 718 / 0.0 unknown protein
Potri.014G170800
[exp]
300 / 4e-94 AT4G12680 685 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10001003 pacid=23182459 polypeptide=Lus10001003 locus=Lus10001003.g ID=Lus10001003.BGIv1.0 annot-version=v1.0
ATGGCTGAGTCAAACTTTGCGAGTACCATTCTCCGATGTTGTTTGACCATCCTCTACGTGGTCTTCGCCTTCTCTGCTGCTCTGATTCTTGGTGCTATCA
AAGCTGTGGTTGTGGGGCCAATTGCAGCTTCAATCTTGATCATAGGGAACTTAGGGGTGATTCTCGGGTTGTTCCCTTACCATGTAGTGTGGACCATCTA
CAGCCTTTCCATAACGAATAGATTCGACATACTGCTCAAAGCAGCGCTGTTAGCAGTGCTCCCAGCATTGGCTGCTCTGTGGCTGGGTTTAAGCATTGCT
GTGACGATTCTTGCTGGTCTGGGTTATGGGTTTTTCACTCCTTGCATCTCGACTTTTGAGGCCTTCAGACACTGCGATGGCTCCAAGAAACTAAGCCACA
TTTTTACGGATGGAACTTGGGACACAATTCGGGGGAGCTGCACTGTGGTCAGGGATTCTGTTGATATGTGCTACCACTCTTACTCAATCTACATGACGGA
GCTTCGTGATTCTCCGCTCTCCGACCAGCTTCGAACTCTTAGGCTGCTTCATCTGCCAGGATTCATAATAGCAGGTTTGCTTGGTCTGATAATAGACATC
CCTCTGTTCACGATAATTGCCGTGGTGAAGAGCCCATACATGCTGTTCAAAGGGTGGTTTAGGCTGGTACACGATCTTATCAGCCGAGAAGGTCCGTTCC
TCGAAACAGCATGCATACCTGTTGCTGGTTTGACCATCTTTCTCTGGCCGCTTGCTGTTGCTGGGAGCATAGTTATGGCCATTTTCTCAAGCTTCGTCAT
CGGACTCTACGCTTCGGTTGTGGTTTATCAGGAGAAGTCATTCTGGAGAGGTGTTGCATATGTGATTGCCATGGTTGCTGAGTTCGACGAGTATACAAAT
GACTGGCTTTATCTCAGAGATGGGACTTTCCTTCCTAAGCCCCGGTATCGGAAGAAAAAGGCTCATTCATCATCTGAGCTTTCAGTTGGAGGAGGGAGTA
CTCGATCGAAACGTAATTCTGCTATGTCAGTAGCCCCTGCAATGCTTGTTCCGAGCTTAGCTCCTTCAAGATCAGTAAGGGAGACCATTCAGGAAGTCAA
AATGATTCAGGTGTGGGAGCACATTATGAGGACATGCGAGACAAGAGGCAAAGAGCTACTAGACAGCGAAGCCATAAAGCAAAGCGATCTCACAGACTGG
CTAAAGCCAAGGAACAACGTCAACAACAGTGGAGCTGTTATAGGCGTGGGATTGCCTTGCTATACGTTGTTAATGACTCTTATGACCTCGATCCGAGCCG
GGTTGGATGGGTTCTTACTCTACGATGGCGTAGAGTTGACCCATCTGAACCGCCCGAACGACGTGCTGCTCGACTGGTTCTTCCACCCTTTACTCCTGCT
CAAAGAACAGATCAAGGCCATTAAGTTGGAAGATGGAGAAGAGAAGTTCTTGCATAAGTTGGTATTGTTCAGCAATGATACTCAGCGGATGGAAGGGTGG
GAGAATGGGAGTGTGGTTCCTGTTGATGCTATGAGAAGTGCTCAACTGGAAGGGATCAGCAGAAGGATGATGGGGATGGCGAGGAGTGTGTCAAAGTGTC
CTACTTATAGGAGGAGATACAGGCAAGTGGTGAAGGCATTGGTTGCTTATTCATCATCAGGAGCAGAAAATCAAAGTACTGGGAGATCCGGTTCGATTCG
GTCGGTTGCTTCGGTTGAACAAGTTTGA
AA sequence
>Lus10001003 pacid=23182459 polypeptide=Lus10001003 locus=Lus10001003.g ID=Lus10001003.BGIv1.0 annot-version=v1.0
MAESNFASTILRCCLTILYVVFAFSAALILGAIKAVVVGPIAASILIIGNLGVILGLFPYHVVWTIYSLSITNRFDILLKAALLAVLPALAALWLGLSIA
VTILAGLGYGFFTPCISTFEAFRHCDGSKKLSHIFTDGTWDTIRGSCTVVRDSVDMCYHSYSIYMTELRDSPLSDQLRTLRLLHLPGFIIAGLLGLIIDI
PLFTIIAVVKSPYMLFKGWFRLVHDLISREGPFLETACIPVAGLTIFLWPLAVAGSIVMAIFSSFVIGLYASVVVYQEKSFWRGVAYVIAMVAEFDEYTN
DWLYLRDGTFLPKPRYRKKKAHSSSELSVGGGSTRSKRNSAMSVAPAMLVPSLAPSRSVRETIQEVKMIQVWEHIMRTCETRGKELLDSEAIKQSDLTDW
LKPRNNVNNSGAVIGVGLPCYTLLMTLMTSIRAGLDGFLLYDGVELTHLNRPNDVLLDWFFHPLLLLKEQIKAIKLEDGEEKFLHKLVLFSNDTQRMEGW
ENGSVVPVDAMRSAQLEGISRRMMGMARSVSKCPTYRRRYRQVVKALVAYSSSGAENQSTGRSGSIRSVASVEQV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37030 unknown protein Lus10001003
[exp]
0 1
AT5G36930 Disease resistance protein (TI... Lus10002249
[exp]
1.7 0.7286
AT3G20190 Leucine-rich repeat protein ki... Lus10034795
[exp]
7.9 0.6300
AT4G30630 unknown protein Lus10026889
[exp]
15.9 0.5948
AT5G41150 ATRAD1, UVH1 ULTRAVIOLET HYPERSENSITIVE 1, ... Lus10000998
[exp]
17.7 0.5874
Lus10005511
[exp]
32.9 0.5567
AT2G34050 unknown protein Lus10007055
[exp]
38.4 0.5128
Lus10019938
[exp]
42.4 0.5709
Lus10001325
[exp]
44.2 0.5687
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Lus10003915
[exp]
52.8 0.5547
AT1G05170 Galactosyltransferase family p... Lus10006782
[exp]
58.7 0.5381

Lus10001003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.