Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17060 75 / 2e-15 FIP2 FRIGIDA interacting protein 2 (.1) AT2G44730 65 / 8e-12 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011020 [exp] 305 / 2e-103 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 192 / 6e-59 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10000963 [exp] 191 / 1e-58 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083800 [exp] 85 / 1e-18 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 80 / 6e-17 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 61 / 2e-10 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G139500 [exp] 58 / 1e-09 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001004 pacid=23182458 polypeptide=Lus10001004 locus=Lus10001004.g ID=Lus10001004.BGIv1.0 annot-version=v1.0 ATGGAGATCGGATCCATCGGATCTAAACAAGAACCGGACGATTCCTCCCCTGTCGTGGCCGTAGCTGATAGTGCTCACAACGGTCTAGACCCTGATCTGG ATTTCGATCCGGATTCAACTTTTAGGGCTAGGAAATTCAGCAAGATGAACAATAATAATAATCATAACTATCACAGTTACAGCAATGGAGGTTACGACGA GTCTCTAGAATTCACTCAGAATTCTGTCAACGTAGCGTTGATGCCTAAGAGTTACGGTAGGTCTGATAGGAAACCTAGGAGATTACAGCAGATGGATGAT TCGAGGGACGAAAGATACAGGCCGGGGAAGAGAGCTGTTGATGAATGGGCGAGCAACAACAGCAATAATGTATCGTCCTCATCGAGGATTCGAGTTAAGA ATCCTGCGACTTCCTCGAGGAGCTTTGATCAGTTTGCTAATGGGGATGCGAATGCCAATGCCAATGCCAAGATGAATAATGGTGGTGGAGGAGTTAGTAC TAGAGACCCAGTTGCGGAAATGGTGTCGGCAATCAAGATGCTTAGAGAAGGGTTTGTAATGGTGGAAGAAATGAAAATGGACATGGCAATGGAGATCGAG AAGATGAGGATGGGGATGGAGCTGAAGCATAACCAGATGCTTGTCGAGATGCAGCAGGACATCGTCGATGCATTCGCCAAAGCATGCTCAAAGAAGAATA AGAATAAGAAGAACAAGAAGAAGAAAGTGGATACCTCCTCGATGCCACTGGATTCGCACAGAAACTGCGAATCCGGGATCGAACCTCCAGCAACACGTTT CGAAACCACTACTGACTGA
AA sequence Show only first row Show all	>Lus10001004 pacid=23182458 polypeptide=Lus10001004 locus=Lus10001004.g ID=Lus10001004.BGIv1.0 annot-version=v1.0 MEIGSIGSKQEPDDSSPVVAVADSAHNGLDPDLDFDPDSTFRARKFSKMNNNNNHNYHSYSNGGYDESLEFTQNSVNVALMPKSYGRSDRKPRRLQQMDD SRDERYRPGKRAVDEWASNNSNNVSSSSRIRVKNPATSSRSFDQFANGDANANANAKMNNGGGGVSTRDPVAEMVSAIKMLREGFVMVEEMKMDMAMEIE KMRMGMELKHNQMLVEMQQDIVDAFAKACSKKNKNKKNKKKKVDTSSMPLDSHRNCESGIEPPATRFETTTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17060		FIP2	FRIGIDA interacting protein 2 ...		Lus10001004 [exp]	0	1
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	2.0	0.8719
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	3.5	0.8602
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	7.7	0.8508
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	8.8	0.8612
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	9.3	0.8005
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	9.4	0.8403
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	10.1	0.8482
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	11.0	0.8621
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	12.0	0.8282
AT5G58020			unknown protein		Lus10035833 [exp]	17.0	0.8365

Compare expression of checked genes

Lus10001004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.