Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17610 1712 / 0 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011019 [exp] 3091 / 0 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150900 [exp] 2165 / 0 AT4G17610 1934 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10001005 pacid=23182460 polypeptide=Lus10001005 locus=Lus10001005.g ID=Lus10001005.BGIv1.0 annot-version=v1.0 ATGGAGGAGTCCTCCTTAGTCTCCTCTCTGTCAACCAGCTTCAAGGATGTCCCGTTGGCAGCTATACCGCCCATGCTCGACTGCATTCTCGCTTCCACTA GCTTGTCTCCGTCTTCGCTCTTCTCCGCGCTTCTGGATTCTTCTTCGGCACTTCTCGTCGAGAATTATATTAGCGGTTTGTGCGTTTCATATGGTTTTGC AGTGATGGATAGCCTGAATGGATTATGCCTTTTCATGTTATACATTACGGAGTTCATTTACGAGATGAACTTTAGTAGTTGCAATTTCAGTTGTGGTTAC TTGCTGCAGGATGATACGCTCAAGGGCCAGGAGTTGGGTCCTGACCAGTGTAATGATGTTGCATCATTGGCAACTGCACTTTGTCATCTACTGAAAAAGT TTGGGGCTAATTCTCCCTGTCTGCGGTCTTTTGTATGGAGATGTTTTGTTCCCTTGCTGAGAGCTAATGCATTTGACCGTGAATTGCTTAATGAGATTGC TGAATCTTTCTTCAACGTCGTGACCACGACTAATTCCTGGACCACTCTAGAGACAACTGTGGTGCCGTTTCTTTTGAGATCTGTTGGTGTTTCTATGGGC ATGCTTCAGCCAGCAGAATCAGATGCCTTTAAATGGGAGGATTCCTCTGGTTTCCAGAATGCAGATGACATGGAAGTTGCCATCGATCATCACAAAGATT ACGCGCTTCCTTCAATGTTCGGGTGTATCCCGTTGCCCATGTCCTGCTATATTCTGACTCTGGTGCTGGATGCGGCTATAAGAAGTTTCAAGCTATTACC AACAGAGAAAAGAGTTATGCCTGGATGCTGTGGTTGGGAAAGACTATCTGGTAATTTGCTTTGGGATCTCTGCTGCATGAGCGAGCGGTTGCTTTTACAA AGTTCAGACCATCGGTCATGTGCTATAGCTATTCTTCTTCCAAATATTTGCAAAGCATTCACCCTTGGAGTCTCGTTTGATGTATCAATTCATGAAAGGA GCTTTAGTCTAACCAGAAATCTTTTCCTTGGGAAGATTTGGCAGTGCTGCAGAACACTATTTTCCCTTGGGACATCAGAAAGAAGGGATGCATATAGTAT ACTCTCTATCTGCTCATCCTTTTTCTGGGAAGAAAGTGATATTACCGATTCAAGTATCAGAGCAGAAGAATTTGACGTGAGGGCTGACCGACAGTTTTGG GAGGAAATAAAAAGCGGCCTGGTTGAAGAGGAACGCTTGATTAGGAAGCAATCACTTGAAATACTGAAAAATGCACTCCACATAAATGGAGATTTAAACA GTTCAAGTGTTTTGGAGGCGTTGCCCCATGGTGATCTTTCAAATCCTCAAGGTTTGACAAAGAGGGAATCGTGGGCTGACAAGGAAGCTAAATCTCTAGG TGTTGGAAAATTCTGCAGTTCGGTTGATTCCCCACTGACCTATCAGCAACAGTGGAAAGCATTTATACTTCTATATGAAATGCTTGAAGAGTACGGTACT CATTTGGTGGAAGCTGCTTGGAATCACCAGGTGACGTTGTTACTTCAGTTTTCTTCTTCAGACAACAATTTTGGAAACACTTTATATGGTATCCATCAAC ATCAGACTGAAACTACACGGGAAAGTTTCGCCTGGTTAGCAATTTTGTGGGTAGTAGGATTTCGTCATGATAATCCTCAAGTCCGGTGCTTGATCATGCA GTCATTTTTGACGATTGACTGGATAAAGTATGGAGAGACAGCTCGATCTGTACCAGAAAGCTTTGTTCTTGGTCCTTTCATTGATGGACTGAATGATCCT ATCCACCACAAAGAATTTGGTATGAAAGGTGTTTACACTTCAAAGACTATCATTGCTGCTGGCGACTTTATATGTCACTATACGAGTTGCCTAAGTGTAA GAGACGGAGTCGCCCTTATAATTGCTCTGGCATCAGTTGTTAAACATCGGTCCATCAGCCGAGCTGGATTGATGGGTCTAGCAGAATGTCTTGCATCTGC TGCTCTTGGGTTAGAAAAATGTAAACGCAGTGAGATAGAACAGAATGCGCCTGATCTGGTTGAAGAGTCTCAAACAGAAGCATCCCTGGAATTTTTTTCT TCCAATGATAAATCAGAGTTACTGGAAGTTTTGAGGTTTGTTTTAGAGACTAGCAGACAACACTTCAACCCAAATTATCGACTTCGAGTGTCCATGAAAA TTTTCGAGGCTGCTGCATCCTTGGTCTACATCTCTGAAGTGCCTCTGGAGATTGTATTGCGACTCATTTCAGCATTTCCAAGGGATTTTACGGATCATGG GGGAGCCTTCAAAGCAAGAACACAAGAATGGCTTCTGGGGTCTTCCACTGAACACGAGAGAACCAGTAACTGCACCACTGAGTTTCAGCTTCTGAAAAGC CTTCAGGAATTCCCCTTGAAGTTTATAAGTGGGCGATCTTCAGCTGATTCTGTTCTTACTTACGATGATGAAGACTTGAAGGCATGGGAGGCTGAAGCCA AAAGATGGGCGAGGGTTCTTTTCACTGTGGTCAGAGGGGAAGCTGAAATAGAACCTGTGTTGACGTCTATTCATGATCTTGGCGTTAGCATCTGCAAGCA GCAAAATCTACTAGGTTGGTTGCCCGTAAAATATCTTGTCCTTAGCATGAGCCTGATTTCCGAGATTCAGTTGGTGGAGGAGAAGGCTAGTGACCATTGC ATTGGAACAATAGAATCTTCTGTCGAAAGTTTGGCAATGACCAGGAGCCTTTCTGCTCAGTTTATGATCGTATTGGAGGAGCTTGTATCTTTTGCCAACA TGTCTTGTCCTATATTTTGGGCCAACATCGGAGAGGATGTAGCTTTGCCTGGAACTGTTAGAGGAAGGCTTGGGGGTCCTAGTCAACGCCGTTTGGCATC AGTTACAACCACTGCAGTGTTACAAGCTATAATTTCAGTGCAAGCGGTTGCCTCAGTTTCAACATGGTGTATTAAATCAAAGGGTGCTGAGCTGAATTCT TCTTGGACGTCTCAGTGGAGCTTCTTCAGGAGAGTTATATCAAGTCCGACACACAAAACAGAGACAGGAGCTGAAGTTGGCATAGCAGCATATGAGGCAT TATCTTATGCTTTGAAAGCGCTGGCATTCACATTCTCTAAGCACTCCTTGAATTTTATCAGGGACAACAACAGATCTTTGCACTTACAAGAAGATGAACC ATTGTTAGATGTGATGGTTCTCTCCTTCCTTGACAATGTCAATAATCTTCTTGCTGTTGGAGCACTAGCACGATCTCGAAGGGCAGTGTTATTGAAATGC AAGTGGCTCTGTCTAGAATCGCTGCTTTCTATTCCTGGTTATGCTCTGGGGAACGGACTTCAAATGGAGGATGCTAGCTTCTTCTCAGATAGAGCTATAA AATCCATTTTTGTCGACCTAGTTGAAAGCCTTGAAAATGCTGCAGAAGTTTCTCTTTTGCCCATGCTGAGGTGTGTCAGGCTGGCCATTCGACTGCTTGC TTCTGGGAAGCAGGGTTCAGTAACTGGTGTTGATGTCCAGATGATGTGGCCTTTGGTCCGTTCTTCCTGGGTATTGCTTGTCAACTGGAACAAGCGGAGG GTTGCCTCCATTGCTGCAGTTCTGTCATCTGTCCTGCATGCTTCTGTGTTTGCTGATGAGGCGATGCACATGAATAACAATAGCCCGGGTCCTTTGAAGT GGTTTATCGACAATCTACTCGAGGAAGGTACAAGAAGTCCACGGACAATTCGTCTTGCAGCGTTGCATCTAACAGGCCTTTGGCTCTCTCATCCACGGAT ATGCATGTACTACATCAAAGAACTGAAGTTGCTAACGCTATATGGCTCCGTTGCCTTCGATGAGGACTTTGAAGCCGAGTTGGTTGAAAATTACGAGGCA AAGACTGAAGTTTCGCTCTTGGCTAACAACCCAGACCCTGAGCTAACCGAGGCATTTATCAACACGGAGTTATATGCTCGTGTATCTGTGGCTGCACTTT TTCAAAAATTAGGTGAGTTGGCTGATTTAATGGGCACATCATATCAAAATGAAGAATGTGATTCTGCTCTTGGAGCTGGCAAGTTGTTTCTCTTGGAACT CCTCGATTCGGCGATCAACAATAGAGACATTGCAAAAGAACTGTATAAGAAATATAGTGCGATCCATAGGCGTAAAATACGTGTTTGGCAAATGATATGT GTTCTCTCTCGTTTTGTCACTGGAGATATTGTTGAGGAAGTCACAAAGAGTATGCATGTTGCTCTTTGTAAAAACAACTTGCCAGCTGTTCGCCAATACT TAGAAACTTTTGCAATCAATATCTTCTTGAAGTTTCCATCTTTGGTGCGGAAACAACTAGTTCCTGTTTTACAGGACTATGGCATGAGGCCTCAGGCGCT TTCGTCCTATGTGTTCATAGCAGCAAATATCATTCTCCATTCCTCTACGCCACTCAAATCGAGGCATTTAGACGAGTTACTTCCTCCAATAATCCCATTG TTGACATCACATCACCATAGCCTGAGGGGTTTTACTCAGTTGCTAGTCTACCAGGTTCTCTGTAGATACTTTTCCCATTTAGACAGTGGAACTGGTGATA CACAGTTAGAGAAGAGGTGCTTTGAAGACTTAAAGTTGTATCTAGCTGAAAATCCCGACTGTAAGCGTTTACGGGAGTCAATGGAGGGATATCTAGACGC CTATGATCCCATCACCTCCTCTACACCTGCTGGAATTTTCGTCAATCGAGTTGAGAAACTAGAATTTGAATGTGTTCCCCCGTCGCTCATGGAGGAACTG CTCGGCTTTCTAAATGATGCTAGGGAGGATCTTAGGTCTGCAATGGCAAAGGATCTCGTGGCTATTAAGAATGAGAGCCTGAAAACTGATGGAAATCCTG ATTCTGTGCCACTTCCAAATTCCAGTCTATCTAATGACACAATGGATTTTCAGAAAAAGATTACTTTGTCCACACACGAAAAAGAGGGAACAAACCACGG TACAAGTTTAGGAGATAATAAAGCGCAGAAACAACTGCTAGAAATGGAAAAGGAAACCGAGCTTCTTGATCAGGCAGTCGAATCTAGAAGGTCGGCTATA AAAAGTATAACAGGAGGACGCCAACAATTTATTGTTGTAGCTTCCTTTCTCGATCGAATACCGAATCTTGCTGGATTAGCAAGGACTTGTGAGATATTTA AAGCCTCAGGGCTAGTCATTGCAGACGCAACTGTTTTACGTGACAAGCAATTCCAGCTGATAAGTGTGACAGCAGAGAAATGGGTTCCAATCATGGAAGT GCCAGTACACAGCGTGAAACAATTCCTCGAAAAGAAAAAGCGGGAAGGCTTCTCTTTGCTGGGATTAGAGCAAACTGCAAATAGCATGCCACTTGATCAG TTTGAGTTCCCGAAAAAGACAGTCTTGGTCCTAGGACGTGAAAAGGAGGGTATACCAGTGGATATAATCCATGTACTAGATGCTTGTGTAGAGATTCCTC AGTTAGGAGTCGTTAGATCGCTCAATGTTCATGTCAGCGGCGCCATCGCTCTCTGGGAGTATACTCGACAGCAGAGGTCTCACTAG
AA sequence Show only first row Show all	>Lus10001005 pacid=23182460 polypeptide=Lus10001005 locus=Lus10001005.g ID=Lus10001005.BGIv1.0 annot-version=v1.0 MEESSLVSSLSTSFKDVPLAAIPPMLDCILASTSLSPSSLFSALLDSSSALLVENYISGLCVSYGFAVMDSLNGLCLFMLYITEFIYEMNFSSCNFSCGY LLQDDTLKGQELGPDQCNDVASLATALCHLLKKFGANSPCLRSFVWRCFVPLLRANAFDRELLNEIAESFFNVVTTTNSWTTLETTVVPFLLRSVGVSMG MLQPAESDAFKWEDSSGFQNADDMEVAIDHHKDYALPSMFGCIPLPMSCYILTLVLDAAIRSFKLLPTEKRVMPGCCGWERLSGNLLWDLCCMSERLLLQ SSDHRSCAIAILLPNICKAFTLGVSFDVSIHERSFSLTRNLFLGKIWQCCRTLFSLGTSERRDAYSILSICSSFFWEESDITDSSIRAEEFDVRADRQFW EEIKSGLVEEERLIRKQSLEILKNALHINGDLNSSSVLEALPHGDLSNPQGLTKRESWADKEAKSLGVGKFCSSVDSPLTYQQQWKAFILLYEMLEEYGT HLVEAAWNHQVTLLLQFSSSDNNFGNTLYGIHQHQTETTRESFAWLAILWVVGFRHDNPQVRCLIMQSFLTIDWIKYGETARSVPESFVLGPFIDGLNDP IHHKEFGMKGVYTSKTIIAAGDFICHYTSCLSVRDGVALIIALASVVKHRSISRAGLMGLAECLASAALGLEKCKRSEIEQNAPDLVEESQTEASLEFFS SNDKSELLEVLRFVLETSRQHFNPNYRLRVSMKIFEAAASLVYISEVPLEIVLRLISAFPRDFTDHGGAFKARTQEWLLGSSTEHERTSNCTTEFQLLKS LQEFPLKFISGRSSADSVLTYDDEDLKAWEAEAKRWARVLFTVVRGEAEIEPVLTSIHDLGVSICKQQNLLGWLPVKYLVLSMSLISEIQLVEEKASDHC IGTIESSVESLAMTRSLSAQFMIVLEELVSFANMSCPIFWANIGEDVALPGTVRGRLGGPSQRRLASVTTTAVLQAIISVQAVASVSTWCIKSKGAELNS SWTSQWSFFRRVISSPTHKTETGAEVGIAAYEALSYALKALAFTFSKHSLNFIRDNNRSLHLQEDEPLLDVMVLSFLDNVNNLLAVGALARSRRAVLLKC KWLCLESLLSIPGYALGNGLQMEDASFFSDRAIKSIFVDLVESLENAAEVSLLPMLRCVRLAIRLLASGKQGSVTGVDVQMMWPLVRSSWVLLVNWNKRR VASIAAVLSSVLHASVFADEAMHMNNNSPGPLKWFIDNLLEEGTRSPRTIRLAALHLTGLWLSHPRICMYYIKELKLLTLYGSVAFDEDFEAELVENYEA KTEVSLLANNPDPELTEAFINTELYARVSVAALFQKLGELADLMGTSYQNEECDSALGAGKLFLLELLDSAINNRDIAKELYKKYSAIHRRKIRVWQMIC VLSRFVTGDIVEEVTKSMHVALCKNNLPAVRQYLETFAINIFLKFPSLVRKQLVPVLQDYGMRPQALSSYVFIAANIILHSSTPLKSRHLDELLPPIIPL LTSHHHSLRGFTQLLVYQVLCRYFSHLDSGTGDTQLEKRCFEDLKLYLAENPDCKRLRESMEGYLDAYDPITSSTPAGIFVNRVEKLEFECVPPSLMEEL LGFLNDAREDLRSAMAKDLVAIKNESLKTDGNPDSVPLPNSSLSNDTMDFQKKITLSTHEKEGTNHGTSLGDNKAQKQLLEMEKETELLDQAVESRRSAI KSITGGRQQFIVVASFLDRIPNLAGLARTCEIFKASGLVIADATVLRDKQFQLISVTAEKWVPIMEVPVHSVKQFLEKKKREGFSLLGLEQTANSMPLDQ FEFPKKTVLVLGREKEGIPVDIIHVLDACVEIPQLGVVRSLNVHVSGAIALWEYTRQQRSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	0	1
AT4G30150			unknown protein		Lus10007572 [exp]	5.0	0.9086
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	7.5	0.8627
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	8.4	0.8850
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	10.2	0.8821
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	12.3	0.8440
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	13.3	0.8994
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	13.6	0.8885
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	14.1	0.8581
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	17.2	0.8882
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10043365 [exp]	19.3	0.8489

Compare expression of checked genes

Lus10001005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.