Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19170 572 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 565 / 0 PA-domain containing subtilase family protein (.1) AT1G62340 545 / 0 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT5G44530 531 / 8e-178 Subtilase family protein (.1) AT4G20430 528 / 2e-176 Subtilase family protein (.1.2) AT1G30600 516 / 5e-172 Subtilase family protein (.1) AT4G34980 302 / 4e-91 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 299 / 7e-90 Subtilase family protein (.1) AT3G14240 294 / 6e-88 Subtilase family protein (.1) AT1G66210 284 / 3e-84 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000960 [exp] 1169 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 1159 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10011018 [exp] 929 / 0 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1) Lus10006973 [exp] 553 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 541 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 540 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10015559 [exp] 527 / 3e-176 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10001310 [exp] 471 / 3e-155 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10008060 [exp] 327 / 3e-99 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151100 [exp] 1080 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.006G076200 [exp] 581 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 580 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G440300 [exp] 545 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 543 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.011G010700 [exp] 350 / 5e-112 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.014G074600 [exp] 301 / 2e-90 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.014G171600 [exp] 298 / 1e-89 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 298 / 1e-89 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.004G173900 [exp] 298 / 2e-89 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10001006 pacid=23182452 polypeptide=Lus10001006 locus=Lus10001006.g ID=Lus10001006.BGIv1.0 annot-version=v1.0 ATGGCTGCTTTGCTTGCATTTATCAGAATCGAACAGGTTGCCATGGCGTACAAAGAGCGGATGACGATCAACCACGACATATTCCTGGAATCCACTCTGA AACACAACTACACCAAGCTCTATAGCTATACTCATCTGCTGAATGGGTTTGCCATCCATGTTGAGTCAGACGAGGTCATCAGCAGTCTCAAGGGTGCAAC AGGAGTCAGAGCTGTACATGAAGACATCAAAATGCAGAAGCTAACAACGCACACTCCTGACTTCCTCGGGATACCTACCAGCGTGTGGCCGTCTTTAGGA GGTGCGGAAAGCTCCGGTGACGGAGTCGTTATAGGTCTGATCGACACAGGGATCAACCCTTTGCATCCTAGTTTCGCAACGGGCTCGTCATCCACAAGGT TCAATGCCACCAAGACGAAGTTCAGAGGGAAATGCGTCACCGGTGCTCAGTTCCCTTCGTCGTCTTGCAATGGGAAGATAGTAGGGGCACGGTACTTCGC TCGTGCTGCTACTGTCGCTGGTGATTTCAACGCTACCCGTGATTGCATGTCTCCTTTCGACGCTGATGGCCATGGAAGGCAAGTATGCCACACTGCTTCT ACAGCTGCTGGAAACCATCAGATTCCAGTGATAGTTAATGGCTTCAACTATGGAAATGCAAGTGGCATGGCTCCTGGGGCTAGGATTGCTGTGTACAAAG CTCTGTACACCTTTGGTGGTTACATGTCAGATGTTGTTGCGGCAGTCGATCAGGCCGTGGAAGATGGAGTAGACATACTAAGCCTGTCCATAGGGCCATC AAGTGTTCCACCTGGTCCTTCTGCTTTCCTCAACGTCCTCGAAATTGCGCTCTTGCTCGCGACCAAAGCAGGCGTGTTTGTAGTTCAAGCAGCCGGCAAT GGCGGCCCTGCTTCCAGCTCAATCCTTTCCTTCAGTCCTTGGATCACCACTGTCGCAGCGGCTATCACCGATCGCCGGTACAACAACACCATCGTCTTGG GGAATGGGCTACGCTTCTCCGGCACTGGCCTTGCTCCTCCGACTTCCGGAACACTATACCTCCCACTAGCAGCAGCCGCCGACGTCTCCAACAGGAACAC AACCAGTGCCATCGAGGTAGAAAGCTGCCAACACCCGGAACACTTCATCCCATCGTCGGCTCGTGGCAAGCTCGTGATCTGCACGTACAACCTTGATTTC GAATCGGAGGCTGCGAGCCTCGCGACCGTTGCGGACACGATACAGAAGGTAGGAGCTGCAGGGTTCATAATCACCATGGATCCCACCATTGGGTCTGAGC AAGTGAAAGGCACCACTTTGACGTTGAAGGTTCCCACTATTGTCCTCAACAACATGCAAGCCTCTTCGGCTCTATGGGAGTACTACAACGCGAAAACCAG AAGGTGGGGAAACGGGGAAGCCATGGCGTTCATGGCGGCGGCGAGAATACTCGGCGGCAGAGAAGCATTCTTCACCGGACAGGCGCCGGTGGTGGCTTCC TATTCGTCGAGAGGCCCCGACGTGAACAATGCGCTCTTGCAGACTGCTGATGTCCTGAAGCCGAACATCATGGCTCCTGGTTCTTCGATCTGGGCTGCTT GGAGCCCCAGCAGTGAAGGAGACCCTTATATAAAAGGCCAGAACTTTGCACTAGTATCAGGAACAAGCATGGCGACGCCACACATAGCCGGCATCGCAGC TCTAATCAAGCACAAGCACCCGAGATGGAGCCCGGCATCAATCACCTCAGCAATGATGACAACTGCCCACAGAAGAGACCCTTCCCGCTCCCCAATCCTA TCCCAATCAGCCAACAACAAGCTCTCCCGAGCCACCCCCTTCGATTTCGGGTCCGGATCAATCAACCCGGCCAGGGCGATCGACCCGGGCCTTGTGTTCA ACGCCTCCTTCGACCACTACCTCCGGTTCCTCTGCTCCGTCTCTGGGGTCGATGATGACTTCGTCCGCCGGGCAGTGGGCTCGCCCTGCCCGCTCCCGCG ACCGACGAGCTCTCGTCGGCCGCGGCAGTGGTGGTGCTCGGACTTGAACGCTCCGAGTATCACTGTCTCGAACCTTATGGGTTCGAGGATAGTGGTCAGG ACCGTGACCAACGTGGGTGGGCTCGACGAGTTGTATAGGGTGTCGGTTAGGATGCCGGTCGGGGTGAATGTGGATGTTGGGCCGCGGAGTTTCATTGTTA GGGCGCATGGTTCGGCTCGGATTGGGATCGTGCTTCGCGCAACGAATGCAACGAGGAGGTACACGTTCGGGGAGATGGTGTTGCATGGGAGCAGAAGGCA TTTGGTTAGGGTTCCTATTGCTGTTTATGTTAGCAGAGTTTAG
AA sequence Show only first row Show all	>Lus10001006 pacid=23182452 polypeptide=Lus10001006 locus=Lus10001006.g ID=Lus10001006.BGIv1.0 annot-version=v1.0 MAALLAFIRIEQVAMAYKERMTINHDIFLESTLKHNYTKLYSYTHLLNGFAIHVESDEVISSLKGATGVRAVHEDIKMQKLTTHTPDFLGIPTSVWPSLG GAESSGDGVVIGLIDTGINPLHPSFATGSSSTRFNATKTKFRGKCVTGAQFPSSSCNGKIVGARYFARAATVAGDFNATRDCMSPFDADGHGRQVCHTAS TAAGNHQIPVIVNGFNYGNASGMAPGARIAVYKALYTFGGYMSDVVAAVDQAVEDGVDILSLSIGPSSVPPGPSAFLNVLEIALLLATKAGVFVVQAAGN GGPASSSILSFSPWITTVAAAITDRRYNNTIVLGNGLRFSGTGLAPPTSGTLYLPLAAAADVSNRNTTSAIEVESCQHPEHFIPSSARGKLVICTYNLDF ESEAASLATVADTIQKVGAAGFIITMDPTIGSEQVKGTTLTLKVPTIVLNNMQASSALWEYYNAKTRRWGNGEAMAFMAAARILGGREAFFTGQAPVVAS YSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPYIKGQNFALVSGTSMATPHIAGIAALIKHKHPRWSPASITSAMMTTAHRRDPSRSPIL SQSANNKLSRATPFDFGSGSINPARAIDPGLVFNASFDHYLRFLCSVSGVDDDFVRRAVGSPCPLPRPTSSRRPRQWWCSDLNAPSITVSNLMGSRIVVR TVTNVGGLDELYRVSVRMPVGVNVDVGPRSFIVRAHGSARIGIVLRATNATRRYTFGEMVLHGSRRHLVRVPIAVYVSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	0	1
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	2.0	0.7194
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	3.7	0.7583
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	4.9	0.7422
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	11.0	0.6686
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	11.5	0.6815
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	15.0	0.6856
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	17.0	0.6923
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	17.7	0.6742
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	19.2	0.6478
AT1G15780			unknown protein		Lus10025452 [exp]	20.2	0.6843

Compare expression of checked genes

Lus10001006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.