Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17600 266 / 8e-90 LIL3:1 Chlorophyll A-B binding family protein (.1) AT5G47110 265 / 1e-89 LIL3:2 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011016 [exp] 380 / 2e-135 AT4G17600 273 / 1e-92 Chlorophyll A-B binding family protein (.1) Lus10040147 [exp] 289 / 8e-99 AT4G17600 289 / 1e-98 Chlorophyll A-B binding family protein (.1) Lus10000959 [exp] 0 / 1 AT4G17600 141 / 3e-65 Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083500 [exp] 279 / 3e-95 AT4G17600 300 / 3e-103 Chlorophyll A-B binding family protein (.1) Potri.001G151300 [exp] 277 / 2e-94 AT4G17600 268 / 2e-90 Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10001008 pacid=23182463 polypeptide=Lus10001008 locus=Lus10001008.g ID=Lus10001008.BGIv1.0 annot-version=v1.0 ATGTCCATTTCCACGGCGCTCCGATCTCCTCCTCTGCCGACGCAGTTGGAAGCAGCTACCAGTTGCAACCACGTCTCTCTCCGGACGACTCTCTTTCTTA GATCCGCGGGGAGAAATGTATCTTCCTCCTCCTCCTGCCTCTCGGCCGGAGGGGTGGCCGGAGTTCCCTCCACTGCCGTCACAGTGGCGGAGGCGAGCAA CGGAGCGGTGCCGAAAGTTAAGAAGTTCGCTGACAGTCGCTGGGTGGAAGGGACTTGGGATTTGAAGCAGTTCCGGAAAGGCGGAGTGGCCGCGGAGACT GATTGGGACGCTGTGATTGACGCCGAGGCGAGGAGGCGAAAATGGCTAGAGAAGAACCCGGAATCGACGGGCAACGACGAGCCTATCCTCTTCGACACCT CGATCGTGCCATGGTGGGCATGGATGAAGAGATACCACCTCCCTGAAGCCGAACTGCTCAATGGTCGAGCTGCGATGGTCGGGTTCTTCATGGCCTACGC GGTCGACAGCTTGACCAGAGTAGGGCTGGTTGACCAAATGGGAAACTTCTTCTGCAAGACACTGTTGTTTGCGGCCGTCGTTGGGGTGCTAGTGATTCGA AAGAATGAGGATTTAGAGACGGTGAAGAAGCTTGTGGAGGAAAGTACCTCCTATGACAAGCAATGGCAGGCAGCTTGGAAGGAGGAGGAGAATAACACTG CAAAAATCGAGTAG
AA sequence Show only first row Show all	>Lus10001008 pacid=23182463 polypeptide=Lus10001008 locus=Lus10001008.g ID=Lus10001008.BGIv1.0 annot-version=v1.0 MSISTALRSPPLPTQLEAATSCNHVSLRTTLFLRSAGRNVSSSSSCLSAGGVAGVPSTAVTVAEASNGAVPKVKKFADSRWVEGTWDLKQFRKGGVAAET DWDAVIDAEARRRKWLEKNPESTGNDEPILFDTSIVPWWAWMKRYHLPEAELLNGRAAMVGFFMAYAVDSLTRVGLVDQMGNFFCKTLLFAAVVGVLVIR KNEDLETVKKLVEESTSYDKQWQAAWKEEENNTAKIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	0	1
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	1.4	0.8762
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	2.4	0.8624
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	2.8	0.8753
AT5G65250			unknown protein		Lus10000635 [exp]	4.9	0.8598
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	5.5	0.8395
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	6.9	0.8158
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	9.8	0.7753
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	11.2	0.8547
AT5G49525			unknown protein		Lus10011181 [exp]	11.4	0.8252
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032040 [exp]	12.2	0.7906

Compare expression of checked genes

Lus10001008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.