Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 295 / 3e-101 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT3G45970 159 / 7e-48 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT4G38400 159 / 1e-47 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 157 / 1e-47 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G28250 122 / 1e-33 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 120 / 1e-32 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 116 / 3e-31 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 99 / 7e-25 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT2G40610 94 / 9e-23 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G65681 93 / 9e-23 EXPB6 beta expansin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011013 [exp] 448 / 5e-162 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 363 / 2e-128 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10040149 [exp] 237 / 1e-78 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10000957 [exp] 236 / 4e-78 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10011012 [exp] 234 / 4e-77 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10001010 [exp] 227 / 2e-74 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10030931 [exp] 188 / 3e-59 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10040148 [exp] 177 / 3e-56 AT4G17030 137 / 7e-41 expansin-like B1 (.1) Lus10003336 [exp] 177 / 1e-54 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 352 / 1e-123 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 335 / 6e-117 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 195 / 6e-62 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 192 / 8e-61 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.009G141400 [exp] 192 / 2e-60 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 183 / 2e-57 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.019G101900 [exp] 122 / 2e-33 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.013G134300 [exp] 119 / 1e-32 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.014G066300 [exp] 110 / 9e-29 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.019G057500 [exp] 89 / 7e-21 AT2G40610 374 / 2e-132 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10001009 pacid=23182456 polypeptide=Lus10001009 locus=Lus10001009.g ID=Lus10001009.BGIv1.0 annot-version=v1.0 ATGGGGTTTGAACTCAAGTTTGGTTGTTATTATTGCCTTTTGGGTGCCATGATTTTGGCCATTTTGCCAAAATCCACCTTTGGGGATGACTATGTCTACT CAAGAGCCACTTTCTATGGCAGTCCTGATTGCTTAGGGACTCCAACTGGTGCTTGTGGTTACGGTGAATTTGGTAGGAATGTGAATGATGCCAACGTGGC TGGTGTTTCTAGGCTCTGGAAGAATGGCACTGGCTGTGGTAATTGCTACCAGGTGAGGTGCAAGGCACCAAATGTGTGCAATGAGAACGGAGTGAACGTA GTGGTGACCGACTACGGCGAGGGCGACCACACCGACTTCATCCTGAGCCCGCGGGCCTACGGGCGAATGGCCCGGCCTGAGTATGCGGCCGAGCTCTACA AATACGGCGTCGTAGATGTCGAATACAAACGTATCCCTTGCAAGTATGCTGCCTCCAATGTCTTGTTCAAGGTCAATGAGCATAGCAAGTACCCTAACTA CTTAGCCATTGTGCTTCTGTACCAAGGGGGCCAATACGACGTCATTTCTGCTGAAATCTGGCAGGAGGACTGCAAGCAATGGAGGGCGATGAGGAAGGCG TACGGGGCAGTGTGGGACGTGGTCTCGCCACCAAAGGGAGCCATAACACTGAGGTTCCAAGTGATGAGCAGTGTGGAAGTGACATGGATCGAGGCCAAGA GTGTTATCCCTGACGAATGGAAAGCCGGTGCCACTTACGACTCGACCATGCAACTCAACTAA
AA sequence Show only first row Show all	>Lus10001009 pacid=23182456 polypeptide=Lus10001009 locus=Lus10001009.g ID=Lus10001009.BGIv1.0 annot-version=v1.0 MGFELKFGCYYCLLGAMILAILPKSTFGDDYVYSRATFYGSPDCLGTPTGACGYGEFGRNVNDANVAGVSRLWKNGTGCGNCYQVRCKAPNVCNENGVNV VVTDYGEGDHTDFILSPRAYGRMARPEYAAELYKYGVVDVEYKRIPCKYAASNVLFKVNEHSKYPNYLAIVLLYQGGQYDVISAEIWQEDCKQWRAMRKA YGAVWDVVSPPKGAITLRFQVMSSVEVTWIEAKSVIPDEWKAGATYDSTMQLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	0	1
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	1.0	0.9571
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	2.0	0.9197
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10026347 [exp]	2.6	0.8279
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	5.2	0.8973
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	6.9	0.8592
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	7.3	0.8361
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	12.0	0.8488
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	13.4	0.7679
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	15.6	0.8079
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	16.4	0.8146

Compare expression of checked genes

Lus10001009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.