Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 220 / 1e-71 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT3G45960 145 / 4e-43 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G38400 141 / 6e-41 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT4G28250 132 / 2e-37 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT3G45970 132 / 3e-37 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT2G20750 126 / 7e-35 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 117 / 1e-31 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 107 / 8e-28 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 102 / 2e-26 EXPB6 beta expansin 6 (.1) AT3G60570 93 / 2e-22 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011012 [exp] 471 / 7e-171 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10000957 [exp] 338 / 3e-118 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10040149 [exp] 335 / 4e-117 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10011013 [exp] 247 / 1e-82 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10001009 [exp] 245 / 1e-81 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10000958 [exp] 244 / 2e-81 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10030931 [exp] 191 / 2e-60 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10003336 [exp] 168 / 3e-51 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 167 / 1e-50 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 261 / 4e-88 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 254 / 5e-85 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 189 / 8e-60 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 184 / 2e-57 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.009G141400 [exp] 178 / 4e-55 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 172 / 9e-53 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.013G134300 [exp] 140 / 1e-40 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 137 / 4e-39 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 119 / 5e-32 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G112900 [exp] 79 / 4e-17 AT1G12560 364 / 5e-128 expansin A7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10001010 pacid=23182457 polypeptide=Lus10001010 locus=Lus10001010.g ID=Lus10001010.BGIv1.0 annot-version=v1.0 ATGACTTCTCTTCTTATGATCTGCCTCATTGCTTCTGCATCATCACTGCTGCTGTTGCCTTCATCATCCACCGGAGCGTCCGAGTTTCGAAGATCGGTGG CCGAGTATTACCGCAGCCCGGATTGCTTGGGTACATCAACTGGAGCTTGTGGCTATGGAATCCACGGACGGACAATCAATGGTGCACTCGTTGCCGGAGT TTCGAGGCTATGGGACAATGGGTATAGTTGCGGTGCTTGCTACCAGGTTAGATGCAAGGACAACTACCTATGCAAAGAGGAAGGCATAACCGTGGTGGTG ACCGATAACGCTTCGGGAGGCAACACCGACTTCATTATGAGCGCTCATGCCTACGGGAGCATGGCTCACCAGAACAGGACCGACGAGCTCTATTGGTTAG GGATGGTGGACGTCGAATACCGGCGCACACCGTGCAAGTTCTCGGGCTATAATCTTATTTTCAAGGTGGTGGAGCAGAGCAGGTACCCTGAGTACTTGGC CATTGCTCCTATGTTCCATGATGGTGAAAATGACATCTATGGTCTGCAAGTAATGCAGGAAGGTGGCGAGGAATGGAAAACTATGGAGAAAGCATGGGGT GGAGTCTGGCACTTGCCTATTCCACCAAGAGGATCCCTTAAGCTTAAGGTCCAAGTTGGCAACAGCTATGGAGACAAAAAATGGATAGAGGCAAAGAAGT CCTTACCGAGTTCGTGGAAGCCCGGTGCTGCTTACGATTCCCATGTCCAGCTTTCTTGA
AA sequence Show only first row Show all	>Lus10001010 pacid=23182457 polypeptide=Lus10001010 locus=Lus10001010.g ID=Lus10001010.BGIv1.0 annot-version=v1.0 MTSLLMICLIASASSLLLLPSSSTGASEFRRSVAEYYRSPDCLGTSTGACGYGIHGRTINGALVAGVSRLWDNGYSCGACYQVRCKDNYLCKEEGITVVV TDNASGGNTDFIMSAHAYGSMAHQNRTDELYWLGMVDVEYRRTPCKFSGYNLIFKVVEQSRYPEYLAIAPMFHDGENDIYGLQVMQEGGEEWKTMEKAWG GVWHLPIPPRGSLKLKVQVGNSYGDKKWIEAKKSLPSSWKPGAAYDSHVQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	0	1
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	1.0	0.9426
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	1.4	0.9359
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	1.7	0.9312
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	3.2	0.9142
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	3.5	0.9165
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	4.7	0.8871
AT2G26390			Serine protease inhibitor (SER...		Lus10005087 [exp]	4.7	0.8673
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	4.9	0.9118
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	8.1	0.8100
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	9.5	0.8869

Compare expression of checked genes

Lus10001010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.