Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 551 / 0 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 539 / 5e-178 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G04940 311 / 3e-93 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT5G13960 298 / 8e-89 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G73100 294 / 5e-87 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 281 / 2e-82 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 277 / 5e-81 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 249 / 1e-70 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 228 / 7e-63 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47160 160 / 2e-42 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011011 [exp] 1580 / 0 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 631 / 0 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10041515 [exp] 323 / 3e-97 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 319 / 9e-96 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10026137 [exp] 307 / 1e-91 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 307 / 2e-91 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 306 / 2e-91 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10035115 [exp] 289 / 1e-84 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10023714 [exp] 284 / 2e-83 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083100 [exp] 610 / 0 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.016G025300 [exp] 315 / 1e-94 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 313 / 6e-94 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.002G237950 [exp] 306 / 3e-91 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G188700 [exp] 306 / 3e-91 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 305 / 7e-91 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.010G064300 [exp] 299 / 1e-88 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 293 / 2e-86 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.014G143900 [exp] 280 / 1e-81 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 272 / 5e-78 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10001011 pacid=23182465 polypeptide=Lus10001011 locus=Lus10001011.g ID=Lus10001011.BGIv1.0 annot-version=v1.0 ATGGGATTGATGGACAATACTATGATGCAAACGAAGTCGATGAATGTGGTGTCTTTAGGCAGCGGAGATGACGAATTTCGAAAGCCCGAGTTTAAACGGC CCGAGTTTAAGCGGCCAAGGAGATTCTATGGTGTTAGGCATTTCCCTCCCGGTTGCGGCCCGCGTGCAAGGACTATTGTGGCTACTCTTGGTGGCGATGA TGATCCCAAGGTACCGGTGTTGGTTCATTTGGATTCCAGAACGAGTGACTCGGTAGTGTCTAGTGATGTTGCTGCGAATCCGATAGGATTGGAGACCGCC AGCAGTGTTGTTGTTGGTGATGATTCCGGCAGTGTTCCGGAAAATGGGATCGAGTCTCGTGTCTTGACAATGTCTTCGGAGTTGGATGATGAAAGCAATG CTGGAAATCGTGCAACTAAGATTGGATCCCATGATTTAAGGCTGTCTGGCGAGCAAATGGATAACGTCGAGTTCAATGGAGATGTCCAACCAGTGGAGAG TCCCGAATCTGCAGGGAGTTCACTATCTGAGAACTTGGAATTACCAGTACATTTGTTACCGGGCGAGGTCATTGGGATATTAAAAGGTGGCTCATCTGAT GCAGATGTTCCTGCTCCATCAAAGATAGCTTCCATTTGTAAATATCCTCCAAGGAGGAAAATGTTAGGTGTTAGAAGCTTTCCTCCAAACTGTGGAAGAA ATGCCAAACCTCTTCACAAGGAAGAAGAAGAAGAAGAGCGGGTGAAAAATGAATCTGAAACGGTTGTGGATGTTAATGTGAATGCTGGATCTCACGAGAG ACAAATAGAAAGCAGTGTCTTAGAACGGGACATTGTTACGGTTGACACAAAGGTGAAAGAGTTTGTCGAGATAGCAACAAGGTGTCCGGATGAAATTGTA TCTTGTTCCGGGGACGTGGCAATGGCTGATCAAGAATGTGAACGCGACAAGGGCACAAAGGTCGGTAAAAAGTCTAAGGTGGTACTTAACTCTAACAGAC AAGGAGATTTGAAGGGGCACCTGCACGAGGACCTATTAGAAAGCAATGTCCATGAACGGAATAGTGTTACGGTTGACACAAAGGTGAAAGAGTTTGTCGA GAAAGCGTCAAGGAGTCCTGATGAAGTTGTATCTTGTTCCGGGGACGTGACAAGGGATGATCGAGAAGGCGACCGTAATAGAGGCATTATTAGTTCACCA CATAATCTCCTTCAGAGTGAGCTCGGGGAAAATTCCAAGGGGCACTTGCAGGAAGACTCTGATGTTCGTAAGGCGAAGGTTGCCGCCCAACGAGAGAATA CAAAGCTATCCGTCCTGAAGAAGATAACCAAACAAAAGTGTGGTGGTCTCAAGGTTGCAGCAGCTAATGTGAGTGAAAAGAGAAAAAAGAAGAAAAAGAA ATTCGTAGCCCGAGAACATAGAAAATCAGCTTCCACACTGAGGAAGAAATCTTCACACAAATCGGAAAATACCGATGGATCTTTGAAGCAAGAGGCTCTA TGTGATGAAGTAAATTTTGCAGAGAATGATGAGAAATGCAATGGTTCGCTATCAATTAGTGGGAACCTTACTCCTTTCGGTCCCGATAGTAGTTCTAAAG GCTTTGCTAGTAGTGCAAGGAAGAAGGTGAGGGAAACATTACGTCTATTTCACTTCATCTGTAGGAAGTTGGTTCATGAATCGGAATCAAGATCAAAGAA AGGAGGGAGGAGTCAAGGTCTAATCGGTCAACGCGTTGACTGTATTGCCGCGAAAGAGCTTAGGAACAGAGGAATGTGTCTTAACGAAGGCCAGTGTATA GTCGGAGATTTGCCCGGAGTTGAAGTTGGCGACGAGTTTCAGTTCAGGTTAGAGCTGAACGTGATCGGTCTCCATCGCCCGACTCAGGCCGGTATTGATT TCGCAAAACAAGGTCGAGATTTTATAGCGGTGAGTATCGTGGCGTCGGCTGGATACGACGATAACCTGGAGAATTCGGATGTGTTGGACTATACCGGTCA GGGAGGGAACTCGACGAAGGATAAAGAAGCCGAAGATCAGAAGCTTGAGAAGGGTAATCTTGGTTTAAAGAACAGCATTGCGACGCGGAATCCTGTGAGA GTGATTCACGGTTATACGAAAAAACTGGAATCGGGTAAGGTTAGAAGCAAGGTTTATGTGTATGATGGCTTATACAACGTGGAGAAGTACTGGCAAGAGC CCGGACCACATGGGAAGCTCGTATTTAAGTTTCGGTTGGTTCGAATTCCGGGTCAACCGGAACTCACTTGGAAACAAGTGAAGAAGTCAAAGAAGCTTAA ACTTAGGGAAGGGTTATGTGTGAGTGATATTTCACAGGGAAAAGAGTTGATTCCTATATGTGCTGTGAATACTGTTGACAATGAGAAGCCTCCATCATTT AGTTACATAACTAAGATTATGTATCCAAATACCCTGGCTGCACCCGATGGATGCGGCTGTAGGACCGGGTGCTCCGAGTCTGGTTCTTCGTGTTCTTGCG TGGCAAGAAATGGCCGCGAGATACCGTTTAATAACAACGGAGCGATCGTTGAAGCGAAGGATCTTGTCTACGAGTGCGGTTCTTCTTGTAAGTGCCCATC TTCTTGTTATAATCGAGTCAGCCAGAACGGAATCAAGATTCAGCTTGAGGTTTTCAAAACCGATTCAAGGGGGTGGGGCGTTCGGTCTTTGAACTCTATC TCGTCCGGGAGTTTTATCTGCGAGTATGTCGGAGAACTTCTCGATGATGTTGAAGCTGAGCGGAGAACGAACGACGAGTATCTGTTCGATATTGGAGGAT GTAGTGACGACGATGATTCAGAAGGGAATAATGGCTCCCCTAACTTCACTATCGATGCTGCGGAGTTTGGCAATGTGGGGAGGTTCATCAATCACAGTTG CTCTCCGAATCTTTACGCGCAGAACGTGCTCTATGACCACGGGGATCGGAGGATCCCTCACATTATGCTCTTCGCTGCTGAAAACATTCCTCCGTTGCGA GAATTAACTTATCACTACAATTATCAAATCGATCAAGTCCGCGACTCGCAGGGCAACATAAAGATGAAAAGTTGCTACTGTGGTTCTTCAGAGTGCACCG GTCGGATGTATTAA
AA sequence Show only first row Show all	>Lus10001011 pacid=23182465 polypeptide=Lus10001011 locus=Lus10001011.g ID=Lus10001011.BGIv1.0 annot-version=v1.0 MGLMDNTMMQTKSMNVVSLGSGDDEFRKPEFKRPEFKRPRRFYGVRHFPPGCGPRARTIVATLGGDDDPKVPVLVHLDSRTSDSVVSSDVAANPIGLETA SSVVVGDDSGSVPENGIESRVLTMSSELDDESNAGNRATKIGSHDLRLSGEQMDNVEFNGDVQPVESPESAGSSLSENLELPVHLLPGEVIGILKGGSSD ADVPAPSKIASICKYPPRRKMLGVRSFPPNCGRNAKPLHKEEEEEERVKNESETVVDVNVNAGSHERQIESSVLERDIVTVDTKVKEFVEIATRCPDEIV SCSGDVAMADQECERDKGTKVGKKSKVVLNSNRQGDLKGHLHEDLLESNVHERNSVTVDTKVKEFVEKASRSPDEVVSCSGDVTRDDREGDRNRGIISSP HNLLQSELGENSKGHLQEDSDVRKAKVAAQRENTKLSVLKKITKQKCGGLKVAAANVSEKRKKKKKKFVAREHRKSASTLRKKSSHKSENTDGSLKQEAL CDEVNFAENDEKCNGSLSISGNLTPFGPDSSSKGFASSARKKVRETLRLFHFICRKLVHESESRSKKGGRSQGLIGQRVDCIAAKELRNRGMCLNEGQCI VGDLPGVEVGDEFQFRLELNVIGLHRPTQAGIDFAKQGRDFIAVSIVASAGYDDNLENSDVLDYTGQGGNSTKDKEAEDQKLEKGNLGLKNSIATRNPVR VIHGYTKKLESGKVRSKVYVYDGLYNVEKYWQEPGPHGKLVFKFRLVRIPGQPELTWKQVKKSKKLKLREGLCVSDISQGKELIPICAVNTVDNEKPPSF SYITKIMYPNTLAAPDGCGCRTGCSESGSSCSCVARNGREIPFNNNGAIVEAKDLVYECGSSCKCPSSCYNRVSQNGIKIQLEVFKTDSRGWGVRSLNSI SSGSFICEYVGELLDDVEAERRTNDEYLFDIGGCSDDDDSEGNNGSPNFTIDAAEFGNVGRFINHSCSPNLYAQNVLYDHGDRRIPHIMLFAAENIPPLR ELTYHYNYQIDQVRDSQGNIKMKSCYCGSSECTGRMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	0	1
AT3G20720			unknown protein		Lus10011166 [exp]	3.2	0.8475
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	3.2	0.8129
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	3.7	0.8321
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	5.7	0.8054
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	5.7	0.8167
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	5.9	0.8082
AT5G66050			Wound-responsive family protei...		Lus10041852 [exp]	6.7	0.7928
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	7.1	0.8215
AT1G33360			ATP-dependent Clp protease (.1...		Lus10040561 [exp]	7.5	0.7943
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	7.7	0.8108

Compare expression of checked genes

Lus10001011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.