Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39740 357 / 9e-119 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT3G45750 103 / 3e-23 Nucleotidyltransferase family protein (.1.2) AT3G45760 81 / 4e-16 Nucleotidyltransferase family protein (.1.2) AT2G45620 77 / 7e-15 Nucleotidyltransferase family protein (.1) AT5G53770 53 / 4e-07 Nucleotidyltransferase family protein (.1) AT3G56320 49 / 6e-06 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 44 / 0.0002 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030154 [exp] 873 / 0 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10015854 [exp] 75 / 6e-14 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009309 [exp] 71 / 1e-12 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 70 / 1e-12 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 64 / 2e-10 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10032691 [exp] 51 / 2e-06 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1) Lus10029045 [exp] 46 / 6e-05 AT3G56320 456 / 1e-153 PAP/OAS1 substrate-binding domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199500 [exp] 402 / 2e-136 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 69 / 5e-12 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.001G400800 [exp] 68 / 5e-12 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) Potri.002G151000 [exp] 68 / 7e-12 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.008G059301 [exp] 0 / 1 AT2G39740 0 / 1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001012 pacid=23139340 polypeptide=Lus10001012 locus=Lus10001012.g ID=Lus10001012.BGIv1.0 annot-version=v1.0 ATGAATGTGCCATTGGAATCTACTTTGCGGGAGATACTTGGTGTGATCGAACCTCAGCGCGAGGATTGGCTGTTGCGGCAAAGAATCATTCAAGAACTGC AAGATGTAGTAGCAACTGTTCCAAGTCTTAGAGGTGCTACAGTGGAGCCCTTCGGATCATTTGTGTCCAATCTTTTCACTCCATGGGGGGACTTGGATAT AACTATTATGCTCGATTATGGTTCTTTCGTTTCAAATGCTGGGAAGAAGCGGCAAGTAACTTTACTTGGGGAAGTCTTAAGAGCTTTGAGGGAGAAAGGT GCTGGCCGATGGTGGAGGTTGCAATTTATACCCAATGCAAAAGTTCCAATTTTAAAATTTGAGAAAGGATCCCCTGCCATCTCTGGCGATATTTCGATTG ACAATCTCAGTGGCCAAATGAAGTCCAAGTGCTTGTTCTGGCTCAATGAAATAGACGAGCGGTTTCGTCCAATGGTGTTACTGGTCAAGGAATGGGCCAA AGCCAATAAAATCAACAATCCAAAGTTTGGGACTCTGAACTCCTACTCCCTGAGTTTGCTTGTGGTCTTCCTTTTTCAGACGTGTGAGCCGGCAATCTTT CCTCCACTTAATGTTATATACCCAGGAGATGTGGGTGATGACCTTAAGGGTGTGAGGGAAGTGGCAGAAAAGAATATCACAGACACTTTTCATGCCAACT TAAGAAGATTTACGGCAAACAGATCCAGACCCTTGAACAGAAGCTCTTTGTCCGAGCTTTTTGTTTCATTCTTGGCAAAATTTTCTACCATACATGAGAA GGCTCGAGACTTTGGAATCTGCCCCTTCACAGCGAAGTGGGAACATTTAGACGGCAACACAAGATGGTGTCCGCGGACCTTTGCTCTCTATGTAGAGGAT CCCTTCGAGCAGCCATCAAATACCGCGAGAACTGTGACTGCTGGAAACCTGGGAAAAATACAGGAGGCATTTCTAATAACCCAACGCAGCATTGTGTCGC AGAATCTAGGTTGGATAGATGTCAACCGGTTGCTGGTGAAGCCAGAGCTAATCCGGCTGATGATGATTAGGAAGCAAAACGCGAGCGGTGGTGGCCAAAT GCAATTTCCCCAGCAGACAATGAAGCATAATCCTGTGCGGGTTAGACCTCATCGAGGTCAAGGTGGAAGAGTGGAAAATCATTCCAATACTTCGAAACCT CCTCAGAGAAATGGAAGTCAACACATGTTGTTTGCAAAGCCAAAGCAAGAGAGCGGGTCAAAGAGTAGTGTCCAGCAAGAAGAGATCGATGGTAACAAGA TGAAGGAAGGGACACTGCAGGGAGATGTGAATAAGCCGCAGTTATGGAGGCCAAAGTACAACAACAAGGATACAAAAATTAAAGATAGTAATCATAAGCC TCTTATCCTATAG
AA sequence Show only first row Show all	>Lus10001012 pacid=23139340 polypeptide=Lus10001012 locus=Lus10001012.g ID=Lus10001012.BGIv1.0 annot-version=v1.0 MNVPLESTLREILGVIEPQREDWLLRQRIIQELQDVVATVPSLRGATVEPFGSFVSNLFTPWGDLDITIMLDYGSFVSNAGKKRQVTLLGEVLRALREKG AGRWWRLQFIPNAKVPILKFEKGSPAISGDISIDNLSGQMKSKCLFWLNEIDERFRPMVLLVKEWAKANKINNPKFGTLNSYSLSLLVVFLFQTCEPAIF PPLNVIYPGDVGDDLKGVREVAEKNITDTFHANLRRFTANRSRPLNRSSLSELFVSFLAKFSTIHEKARDFGICPFTAKWEHLDGNTRWCPRTFALYVED PFEQPSNTARTVTAGNLGKIQEAFLITQRSIVSQNLGWIDVNRLLVKPELIRLMMIRKQNASGGGQMQFPQQTMKHNPVRVRPHRGQGGRVENHSNTSKP PQRNGSQHMLFAKPKQESGSKSSVQQEEIDGNKMKEGTLQGDVNKPQLWRPKYNNKDTKIKDSNHKPLIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	0	1
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	1.7	0.9263
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	2.0	0.9239
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	2.2	0.9312
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	4.5	0.9281
AT4G40030			Histone superfamily protein (....		Lus10000284 [exp]	4.9	0.9053
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	6.3	0.8949
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	6.5	0.9002
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	6.7	0.9088
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	7.1	0.9232
AT5G58300			Leucine-rich repeat protein ki...		Lus10039422 [exp]	7.4	0.8754

Compare expression of checked genes

Lus10001012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.