Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39750 1036 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 981 / 0 Putative methyltransferase family protein (.1) AT1G77260 894 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 498 / 1e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 491 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 489 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 491 / 1e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 479 / 5e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 479 / 6e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 474 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030155 [exp] 1346 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 1138 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 1088 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042762 [exp] 664 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 656 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 646 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 560 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 502 / 1e-168 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 495 / 6e-166 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059500 [exp] 1089 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 1060 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 872 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 509 / 1e-169 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 498 / 6e-169 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 491 / 6e-164 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G104000 [exp] 488 / 2e-162 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 488 / 3e-162 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 484 / 2e-161 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G017400 [exp] 490 / 8e-161 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001013 pacid=23139333 polypeptide=Lus10001013 locus=Lus10001013.g ID=Lus10001013.BGIv1.0 annot-version=v1.0 ATGAAAGCGACGGCCAGTTTGGATCTTTTCAAAACTCCTCTCGCTATCAAGATCGCTGCCTTCACCTTGATTACACTCACCTTCTTCTACTTGGGCAAGC ACTGGAGCAGCAGCTCCAATGCCTACCAACAGGCTGTTTTCTTCTCTTCTACACCAGGCACGTCTGTCGGCATCTCTCCCAACAACGCCAAGTCGTTTAA TGTCACTGCTCTGATAGCTCAGAACCAGACTGATACCGAATCTGAACATGACCTCTCTCGGCAACGGGATACTACTTCAGTTGTTGTGGACCAGCCTTCT CCTCCGGCGGCGGCATCGGATCGGACGTTAGGGATAATCGACGGAGATGGTAAAATGAGCGATGATTTTCAGGTGGAGGAGGTGGATCCAGAGGTTGTGG AGAATTGGGGGAATCAGACTGGGATTGAGAGTGATGTTAGTAAGGGTTTTAGGGTTAGTGTTAAGAAATTCGAGCTGTGTCCTGAGAGCAGGAGAGAGTA TATTCCGTGTTTGGACAATGTAGAGGCAATCAAGAGGTTGAAATCGACTGAGAAAGGGGAGAGATTTGAGCGGCATTGTCCTAAGAAAGGGAAAGAGTTG AATTGCTTGGTTCCACCGCCCAAAGGGTACCGCCAACCAATCCCATGGCCCCGGAGTCGTGACGAGGTTTGGTTTTCCAATGTCCCCCACACACGGTTAG TTGAAGATAAGGGAGGTCAGAACTGGATTACCAAAGACAAGGATAAGTTCAAGTTCCCTGGCGGTGGGACGCAGTTCATACATGGCGCAGATCAATATTT GGATCAGATTTCTAAGATGGTCCCAGATATTGCTTTTGGTAAGCACACAAGGGTTGTTCTGGATGTTGGGTGTGGTGTAGCAAGTTTCGGTGCATATCTA CTATCCCGAGAGGTCTTGCCTTTGTCAATAGCTCCTAAAGATGTTCATGAGAACCAGATCCAATTTGCTCTTGAGCGTGGTGTCCCTGCCATGGTGGCTG CGTTTTCAACTCATCGGCTGCTGTATCCAAGCCAGGCTTTTGAAATAATCCACTGTTCAAGATGTAGGATCAATTGGACTCGTGATGATGGAATCTTGCT ACTTGAGGTCAACAGGATGATGCGAGCTGGAGGATACTTTGTTTGGGCAGCCCAGCCAGTGTACAAGCATGAGCAAGCACTGGAGGAACAGTGGGAAGAG ATGCTTAACCTTACAACTAGACTTTGCTGGGAGCTTGTGAAGAAGGAAGGATATATTGCAATATGGCAGAAGCCCAAGAACAATAGCTGCTATTTAAGTC GAGAAATCGGAGTTAGTCCTCCATTATGTGAACCTGATGATGATCCCGATAAAGTTTGGTATGTTGATTTAAAACCGTGCATTACTCGTATTCCTGAGAC TGGATATGGCGCCAATGTAACTACTTGGCCGGCTCGTCTACATACTCCTCCTGATAGGCTTCAGAGTATACAAATGGATGCTTATATTTCCAGAAAAGAG CTTTTCAAGGCTGAATCAAAATATTGGTCTGAAATAATAGCTGGCTATATACGTGCTTGGCATTGGAAGCAGCTTAAGCTTAGGAATGTCTTGGACATGA AGGCGGGTTTTGGAGGATTTGCTGCTGCACTAATTGATCATGGATTCAATAGCTGGGTTCTAAACGTCGTTCCAGTAAGTGGGCCAAACACACTGCCTGT CATATATGACCGTGGACTAATCGGTGTCATGCATGACTGGTGTGAGCCGTTGGACACATACCCAAGAACCTATGATTTATTGCATGCTTCTGGGCTTTTC TCAGTTGAAAGGAAAAGATGTAGCATGTCTAGCATAATGCTTGAAATGGATCGTATACTTAGGCCTGGGGGTCGAGTATACATCCGTGATATCCTTGATG TCATGGAAGAACTTCAAGAGATTGCCAAGGCCATGGGTTGGCATACGGCCTTACACGACACATCAGAGGGTCCTCATGCAAGTTATAGGATTTTTGTCTG CGATAAACGGCTTTTGCGTTCGTAA
AA sequence Show only first row Show all	>Lus10001013 pacid=23139333 polypeptide=Lus10001013 locus=Lus10001013.g ID=Lus10001013.BGIv1.0 annot-version=v1.0 MKATASLDLFKTPLAIKIAAFTLITLTFFYLGKHWSSSSNAYQQAVFFSSTPGTSVGISPNNAKSFNVTALIAQNQTDTESEHDLSRQRDTTSVVVDQPS PPAAASDRTLGIIDGDGKMSDDFQVEEVDPEVVENWGNQTGIESDVSKGFRVSVKKFELCPESRREYIPCLDNVEAIKRLKSTEKGERFERHCPKKGKEL NCLVPPPKGYRQPIPWPRSRDEVWFSNVPHTRLVEDKGGQNWITKDKDKFKFPGGGTQFIHGADQYLDQISKMVPDIAFGKHTRVVLDVGCGVASFGAYL LSREVLPLSIAPKDVHENQIQFALERGVPAMVAAFSTHRLLYPSQAFEIIHCSRCRINWTRDDGILLLEVNRMMRAGGYFVWAAQPVYKHEQALEEQWEE MLNLTTRLCWELVKKEGYIAIWQKPKNNSCYLSREIGVSPPLCEPDDDPDKVWYVDLKPCITRIPETGYGANVTTWPARLHTPPDRLQSIQMDAYISRKE LFKAESKYWSEIIAGYIRAWHWKQLKLRNVLDMKAGFGGFAAALIDHGFNSWVLNVVPVSGPNTLPVIYDRGLIGVMHDWCEPLDTYPRTYDLLHASGLF SVERKRCSMSSIMLEMDRILRPGGRVYIRDILDVMEELQEIAKAMGWHTALHDTSEGPHASYRIFVCDKRLLRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	0	1
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	1.0	0.9384
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	5.7	0.8655
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	6.0	0.8454
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	6.7	0.8180
AT5G07620			Protein kinase superfamily pro...		Lus10032493 [exp]	6.9	0.8610
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	7.1	0.8771
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	8.3	0.8752
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	9.5	0.8568
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	10.5	0.8621
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	12.0	0.8321

Compare expression of checked genes

Lus10001013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.