Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 457 / 2e-162 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 441 / 9e-156 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 351 / 4e-121 Glucose-1-phosphate adenylyltransferase family protein (.1) AT1G74910 134 / 6e-36 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 127 / 3e-33 ADP-glucose pyrophosphorylase family protein (.1) AT5G19220 42 / 0.0005 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004699 [exp] 483 / 3e-172 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 483 / 3e-172 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 462 / 2e-164 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 353 / 1e-121 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10014608 [exp] 160 / 9e-48 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10042942 [exp] 123 / 1e-31 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10032440 [exp] 122 / 1e-31 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10039916 [exp] 111 / 1e-28 AT2G39770 116 / 1e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010880 [exp] 108 / 6e-28 AT2G39770 115 / 4e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198800 [exp] 465 / 1e-165 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 464 / 3e-165 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 454 / 3e-161 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 389 / 3e-135 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 136 / 8e-37 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 121 / 4e-31 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.014G110000 [exp] 45 / 6e-05 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase CL0536 [flax] [poplar] HEXAPEP PF00132 [flax] [poplar] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Lus10001014 pacid=23139335 polypeptide=Lus10001014 locus=Lus10001014.g ID=Lus10001014.BGIv1.0 annot-version=v1.0 ATGGTCATCTCATCCTCCTCCTCCACCCAACTAATCTTCTCACCTGATCTCGCCGCCGGTTCTGACTCTTTCGTCTTCCGGCTGGCTCGGTCTCTCCCTC ACCTCCCGGAACCCCATCCACCCTCCAAACGACTAAGGAGACTGAACCCCTCGGGACTGCTGGTCCTCTGGCTCTTGCTAGGGAAGCTAATGGATAAGTC TGGTGAACCGTTTTTCGTCCTCAACAGCGATGTCATCAGCGAATACCCTTTCAAGGAAATGATAGCATTTCACAAAGCTCACGGTGGGGAGGCTTCTATC ATGGTCACCAAGGTTGATGAGCCATCAAAATACGGTGTGGTGGTCATGGATGCTACAGGAAAAGTTGAGAAATTTGTTGAAAAGCCAAAGTTGTTCGTTG GCAATAAAATCAACGCTGGAATTTACTTATTGAATCCTTCTGTGTTGGATCGAATTCAGCTGAGACCAACCTCAATCGAGAAAGAGGTGTTCCCCATGAT AGCCACAGACAAGAAACTATTTGCGATGGTCCTCCCAGGGTTCTGGATGGACATCGGCCAGCCAAGAGACTACATTACAGGATTGAGACTTTACCTCGAT TCCCTGAGGAGGAACAACAAGTCCTCATCGAGATTGGCCACTGGGTCCCACATAGTTGGCAATGTGTTGGTGGACGAGACGGCCAAGATAGGCGAGGGAT GTTTGATCGGTCCCGACGTGGCCATAGGTCCGGGATGCGTTGTGGAGGCAGGTGTCAGACTGTCCCGTTGCACCGTGATGCGCGGGGTCCGTGTAAAGAA GCACTTCTGCATTTCGAGCAGCATCATCGGCTGGCACTCCATGGTTGGCCAATGGGCTCGGGTCGAGAACATGACGATCCTGGGAGAGGATGTGCATGTA TGCGACGAGGTTTACAGCAATGGAGGTGTTGTTTTGCCCCATAAGGAGATGAAGTCGAGCATTTTGAAGCCGGAGATCGTGATGTGA
AA sequence Show only first row Show all	>Lus10001014 pacid=23139335 polypeptide=Lus10001014 locus=Lus10001014.g ID=Lus10001014.BGIv1.0 annot-version=v1.0 MVISSSSSTQLIFSPDLAAGSDSFVFRLARSLPHLPEPHPPSKRLRRLNPSGLLVLWLLLGKLMDKSGEPFFVLNSDVISEYPFKEMIAFHKAHGGEASI MVTKVDEPSKYGVVVMDATGKVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIQLRPTSIEKEVFPMIATDKKLFAMVLPGFWMDIGQPRDYITGLRLYLD SLRRNNKSSSRLATGSHIVGNVLVDETAKIGEGCLIGPDVAIGPGCVVEAGVRLSRCTVMRGVRVKKHFCISSSIIGWHSMVGQWARVENMTILGEDVHV CDEVYSNGGVVLPHKEMKSSILKPEIVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	0	1
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	2.6	0.8608
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	2.8	0.8281
AT5G24650			Mitochondrial import inner mem...		Lus10005289 [exp]	3.3	0.8273
AT2G34060			Peroxidase superfamily protein...		Lus10013955 [exp]	4.5	0.8516
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	8.1	0.8215
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	8.7	0.8159
AT3G60520			unknown protein		Lus10042880 [exp]	8.8	0.8024
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	12.6	0.8145
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	18.8	0.8325
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	19.7	0.8357

Compare expression of checked genes

Lus10001014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.