Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55605 234 / 4e-77 Mitochondrial glycoprotein family protein (.1) AT5G05990 220 / 8e-72 Mitochondrial glycoprotein family protein (.1) AT2G39795 215 / 8e-70 Mitochondrial glycoprotein family protein (.1) AT5G02050 179 / 2e-55 Mitochondrial glycoprotein family protein (.1) AT2G39790 142 / 1e-41 Mitochondrial glycoprotein family protein (.1) AT1G15870 106 / 9e-28 Mitochondrial glycoprotein family protein (.1) AT1G80720 102 / 9e-27 Mitochondrial glycoprotein family protein (.1) AT4G31930 85 / 9e-20 Mitochondrial glycoprotein family protein (.1) AT4G32605 69 / 9e-14 Mitochondrial glycoprotein family protein (.1) AT2G46190 63 / 1e-11 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030157 [exp] 475 / 2e-172 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 323 / 4e-113 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1) Lus10024351 [exp] 193 / 5e-61 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 171 / 7e-54 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 98 / 2e-24 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10018327 [exp] 94 / 5e-23 AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) Lus10017126 [exp] 93 / 1e-22 AT4G31930 240 / 3e-80 Mitochondrial glycoprotein family protein (.1) Lus10012652 [exp] 71 / 1e-13 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10014351 [exp] 66 / 1e-13 AT1G80720 122 / 1e-36 Mitochondrial glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198600 [exp] 290 / 2e-99 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 275 / 3e-93 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.006G090700 [exp] 234 / 2e-77 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 210 / 4e-68 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 95 / 2e-23 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.018G021600 [exp] 86 / 4e-20 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.004G049600 [exp] 81 / 5e-18 AT5G02050 96 / 4e-23 Mitochondrial glycoprotein family protein (.1) Potri.010G244500 [exp] 61 / 4e-11 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.008G015600 [exp] 61 / 8e-11 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1) Potri.006G046350 [exp] 50 / 2e-07 AT2G41600 210 / 2e-69 Mitochondrial glycoprotein family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10001015 pacid=23139342 polypeptide=Lus10001015 locus=Lus10001015.g ID=Lus10001015.BGIv1.0 annot-version=v1.0 ATGGCGTTGAGATCACTGTTACAGAAATCAGCATCCAGTTTGGCCCCTCTCGTCGGTCGAGCTGCTTGTCGAATCGAGACTCGGAGAAGCCTCTGTTCAG CTATCTTTAAGAGAGGAAACGCTGCTGCTTCCTCTTATTTACAAGGTTATTCTACAGCTGCCGATACCAAGCCGTTTCTGTCCGGTGGTTCCATCCTCCG AGTCGTCGAAGATGAAATCAAGGCTGCTGAAGAGACTGATGATCACAATCGGGTTGAGGATGTTCCAGCAGATTTTCCATTCAAGATGGAGGACAACCCA GGCCAACAGACTCTGACATTGACAAGAGATTACGAGGGTGAACATGTAAAGGTTGAGGTTCACATGCCTGATCTTGTGACTGGGGAAGAAGATGATGTTC GCAATGATGACGATGATGATGATACCGAAAGGCCAACACAGTCAAGCCTTCCCTTGGTTGTCACCGTCACCAAGAAGAGTGGAATCTCGTTGGAGTTCAG CTGTGTTGCCTTTGCAGATGAGATTTCAATTGACAGCTTGTCCGTTAAAAAACCCGAACATACTGAGGAAATGGCCTACGACGGGCCTAACTTCAATGAT TTGGATGAGAATCTGAAGAATGCTTTCCACAAGTATTTGGAGATACGTGGAATCAAGCCTAGCACAACAAACTTCCTGCATGAGTATATGATCAACAAAG ACAGCAGAGAGTATCTGGGATGGCTGAAAGAACTCAAAAACTTCGTGGAGGCATGA
AA sequence Show only first row Show all	>Lus10001015 pacid=23139342 polypeptide=Lus10001015 locus=Lus10001015.g ID=Lus10001015.BGIv1.0 annot-version=v1.0 MALRSLLQKSASSLAPLVGRAACRIETRRSLCSAIFKRGNAAASSYLQGYSTAADTKPFLSGGSILRVVEDEIKAAEETDDHNRVEDVPADFPFKMEDNP GQQTLTLTRDYEGEHVKVEVHMPDLVTGEEDDVRNDDDDDDTERPTQSSLPLVVTVTKKSGISLEFSCVAFADEISIDSLSVKKPEHTEEMAYDGPNFND LDENLKNAFHKYLEIRGIKPSTTNFLHEYMINKDSREYLGWLKELKNFVEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	0	1
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	1.4	0.9007
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	4.0	0.8595
AT3G17130			Plant invertase/pectin methyle...		Lus10002739 [exp]	5.3	0.8544
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	6.2	0.8590
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	9.5	0.8312
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030894 [exp]	10.1	0.8467
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	10.9	0.8119
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	11.5	0.8342
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10006419 [exp]	13.0	0.8038
AT3G17130			Plant invertase/pectin methyle...		Lus10016319 [exp]	13.4	0.8220

Compare expression of checked genes

Lus10001015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.